D. rerio Gene: cdk8 - ENSDARG00000016496 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000016496
Namecdk8
Descriptioncyclin-dependent kinase 8 [Source:ZFIN;Acc:ZDB-GENE-030903-2]
OrganismDanio rerio (zebrafish)
Synonym(s)wu:fk95h11
Orthologs(s)24 orthologs
Paralog(s)439 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
1.29e3
  • 1.29e3
  • 3.21e3
  • 3.30e3
  • 4.16e3
  • 4.74e3
95.69
  • 95.69
  • 89.24
  • 88.94
  • 86.09
  • 84.12
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
2.24e3
  • 2.24e3
  • 3.57e3
  • 4.26e3
  • 4.59e3
  • 4.61e3
  • 4.69e3
  • 4.83e3
  • 5.03e3
  • 5.06e3
  • 5.71e3
  • 6.01e3
  • 7.02e3
  • 7.11e3
  • 7.83e3
  • 1.47e4
  • 1.49e4
  • 1.49e4
92.51
  • 92.51
  • 88.05
  • 85.73
  • 84.65
  • 84.56
  • 84.29
  • 83.83
  • 83.17
  • 83.06
  • 80.87
  • 79.88
  • 76.49
  • 76.18
  • 73.79
  • 50.90
  • 50.25
  • 50.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
2.43e3
  • 2.43e3
  • 1.50e4
91.85
  • 91.85
  • 49.89
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.49e3
  • 2.49e3
91.65
  • 91.65
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.35e3
  • 3.35e3
88.80
  • 88.80
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.36e3
  • 3.36e3
88.76
  • 88.76
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
3.78e3
  • 3.78e3
  • 3.90e3
  • 3.93e3
  • 4.17e3
  • 4.42e3
  • 4.79e3
  • 5.24e3
  • 5.29e3
  • 6.76e3
  • 9.27e3
87.35
  • 87.35
  • 86.94
  • 86.83
  • 86.04
  • 85.20
  • 83.97
  • 82.47
  • 82.28
  • 77.38
  • 68.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
3.85e3
  • 3.85e3
  • 4.03e3
  • 5.68e3
  • 6.17e3
  • 6.23e3
  • 6.76e3
87.10
  • 87.10
  • 86.50
  • 80.97
  • 79.34
  • 79.13
  • 77.38
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
3.91e3
  • 3.91e3
86.92
  • 86.92
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
4.01e3
  • 4.01e3
86.58
  • 86.58
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
4.24e3
  • 4.24e3
85.81
  • 85.81
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
4.27e3
  • 4.27e3
85.72
  • 85.72
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
4.58e3
  • 4.58e3
84.67
  • 84.67
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
4.70e3
  • 4.70e3
84.27
  • 84.27
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
4.76e3
  • 4.76e3
  • 8.71e3
84.05
  • 84.05
  • 70.85
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
4.85e3
  • 4.85e3
  • 4.88e3
  • 6.27e3
  • 6.90e3
83.78
  • 83.78
  • 83.67
  • 79.02
  • 76.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000007Cleavage:64-cell
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000106zygote stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000015Blastula:Dome
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
4.98e3
  • 4.98e3
  • 6.40e3
  • 6.40e3
  • 6.40e3
  • 6.64e3
  • 6.89e3
  • 7.12e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.97e3
  • 8.30e3
  • 8.53e3
  • 8.71e3
  • 8.79e3
  • 8.79e3
  • 8.96e3
  • 8.96e3
  • 9.13e3
  • 9.13e3
  • 9.13e3
  • 9.71e3
  • 9.96e3
  • 1.08e4
83.33
  • 83.33
  • 78.57
  • 78.57
  • 78.57
  • 77.77
  • 76.92
  • 76.18
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 73.32
  • 72.22
  • 71.43
  • 70.82
  • 70.57
  • 70.57
  • 69.99
  • 69.98
  • 69.43
  • 69.43
  • 69.43
  • 67.48
  • 66.65
  • 63.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
5.40e3
  • 5.40e3
  • 7.42e3
81.93
  • 81.93
  • 75.17
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
5.41e3
  • 5.41e3
81.87
  • 81.87
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
5.59e3
  • 5.59e3
  • 1.50e4
81.29
  • 81.29
  • 49.92
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.98e3
  • 5.98e3
79.97
  • 79.97
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
6.05e3
  • 6.05e3
  • 7.92e3
79.74
  • 79.74
  • 73.49
AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
6.18e3
  • 6.18e3
79.31
  • 79.31
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.37e3
  • 6.37e3
78.69
  • 78.69
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.54e3
  • 6.54e3
78.09
  • 78.09
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.77e3
  • 6.77e3
77.32
  • 77.32
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
6.86e3
  • 6.86e3
77.04
  • 77.04
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.28e3
  • 7.28e3
75.63
  • 75.63
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
7.68e3
  • 7.68e3
  • 7.99e3
  • 1.08e4
74.30
  • 74.30
  • 73.24
  • 63.74
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.83e3
  • 7.83e3
73.79
  • 73.79
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
7.84e3
  • 7.84e3
73.75
  • 73.75
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
8.40e3
  • 8.40e3
71.87
  • 71.87
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
9.81e3
  • 9.81e3
67.17
  • 67.17
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
9.92e3
  • 9.92e3
66.79
  • 66.79
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
63.20
  • 63.20
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi17 species17 genesCompare expression
Bilateria24 species24 genesCompare expression

Orthology information comes from OMA : ENSDARG00000016496.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eumetazoa1 geneCompare expression
Eukaryota439 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000016496.

Cross-references

EnsemblENSDARG00000016496 (cdk8)
ZFINZDB-GENE-030903-2 (cdk8)
EMBLAL929009, BC153307
Uniprot/SPTREMBLA8E4S2, A8E4S2_DANRE

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