D. rerio Gene: rbm8a - ENSDARG00000016516 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000016516
Namerbm8a
DescriptionRNA binding motif protein 8A [Source:ZFIN;Acc:ZDB-GENE-050306-51]
OrganismDanio rerio (zebrafish)
Synonym(s)fb34f03, rbm8, wu:fb34f03, zgc:110525
Orthologs(s)24 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
131
  • 131
  • 194
  • 226
  • 267
  • 278
  • 306
99.56
  • 99.56
  • 99.35
  • 99.25
  • 99.11
  • 99.07
  • 98.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
175
  • 175
99.42
  • 99.42
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
178
  • 178
99.41
  • 99.41
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
206
  • 206
  • 272
  • 334
  • 717
  • 804
99.31
  • 99.31
  • 99.09
  • 98.88
  • 97.60
  • 97.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000106zygote stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
207
  • 207
  • 214
  • 217
  • 262
  • 333
  • 344
  • 422
  • 603
  • 753
  • 855
  • 1.11e3
  • 1.30e3
  • 1.31e3
  • 1.37e3
  • 4.98e3
  • 6.54e3
  • 6.64e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.97e3
  • 7.03e3
  • 7.47e3
  • 7.47e3
  • 7.91e3
  • 8.96e3
  • 8.96e3
99.31
  • 99.31
  • 99.29
  • 99.28
  • 99.13
  • 98.89
  • 98.85
  • 98.59
  • 97.98
  • 97.48
  • 97.14
  • 96.28
  • 95.65
  • 95.61
  • 95.42
  • 83.33
  • 78.12
  • 77.77
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 76.66
  • 76.46
  • 74.99
  • 74.99
  • 73.52
  • 69.99
  • 69.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
234
  • 234
99.22
  • 99.22
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
321
  • 321
  • 459
  • 2.22e3
  • 2.64e3
98.93
  • 98.93
  • 98.46
  • 92.58
  • 91.15
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
357
  • 357
98.81
  • 98.81
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
410
  • 410
  • 412
  • 479
  • 486
  • 527
  • 542
  • 548
  • 560
  • 613
  • 825
98.63
  • 98.63
  • 98.62
  • 98.40
  • 98.38
  • 98.24
  • 98.19
  • 98.17
  • 98.13
  • 97.95
  • 97.24
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
442
  • 442
98.52
  • 98.52
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
472
  • 472
  • 1.45e3
98.42
  • 98.42
  • 95.15
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
513
  • 513
98.29
  • 98.29
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
570
  • 570
98.09
  • 98.09
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
572
  • 572
  • 946
98.09
  • 98.09
  • 96.84
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
591
  • 591
  • 1.35e3
98.03
  • 98.03
  • 95.48
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
702
  • 702
97.65
  • 97.65
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
788
  • 788
97.36
  • 97.36
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
877
  • 877
97.07
  • 97.07
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
894
  • 894
97.01
  • 97.01
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
921
  • 921
96.92
  • 96.92
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
962
  • 962
  • 1.38e3
  • 1.39e3
96.78
  • 96.78
  • 95.39
  • 95.35
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.02e3
  • 1.02e3
96.59
  • 96.59
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.04e3
  • 1.04e3
96.51
  • 96.51
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.15e3
  • 1.15e3
96.14
  • 96.14
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.28e3
  • 1.28e3
  • 1.91e3
95.72
  • 95.72
  • 93.60
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.31e3
  • 1.31e3
95.61
  • 95.61
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.32e3
  • 1.32e3
95.58
  • 95.58
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
1.35e3
  • 1.35e3
95.47
  • 95.47
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.41e3
  • 1.41e3
95.28
  • 95.28
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.13e3
  • 2.13e3
92.86
  • 92.86
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.92e3
  • 5.92e3
80.18
  • 80.18
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi16 species17 genesCompare expression
Bilateria23 species24 genesCompare expression

Orthology information comes from OMA : ENSDARG00000016516.

Cross-references

EnsemblENSDARG00000016516 (rbm8a)
ZFINZDB-GENE-050306-51 (rbm8a)
EMBLBC090261
Uniprot/SWISSPROTQ5D018, RBM8A_DANRE

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