D. rerio Gene: npas2 - ENSDARG00000016536 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000016536
Namenpas2
Descriptionneuronal PAS domain protein 2 [Source:ZFIN;Acc:ZDB-GENE-030408-3]
OrganismDanio rerio (zebrafish)
Synonym(s)zfclock2
Orthologs(s)4 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
4.01e3
  • 4.01e3
  • 1.11e4
86.58
  • 86.58
  • 62.69
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
6.43e3
  • 6.43e3
  • 1.15e4
78.47
  • 78.47
  • 61.58
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
9.56e3
  • 9.56e3
67.99
  • 67.99
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
9.60e3
  • 9.60e3
67.85
  • 67.85
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.18e4
  • 1.18e4
  • 1.48e4
60.57
  • 60.57
  • 50.31
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
59.33
  • 59.33
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
  • 1.28e4
58.91
  • 58.91
  • 57.07
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.38
  • 58.38
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
57.84
  • 57.84
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
1.30e4
  • 1.30e4
  • 1.85e4
  • 1.88e4
  • 1.93e4
  • 2.05e4
56.63
  • 56.63
  • 38.07
  • 37.17
  • 35.45
  • 31.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000104life cycle
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
1.44e4
  • 1.44e4
  • 1.69e4
  • 1.79e4
  • 1.81e4
  • 1.83e4
51.88
  • 51.88
  • 43.57
  • 40.18
  • 39.42
  • 38.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
51.82
  • 51.82
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.45e4
  • 1.45e4
51.51
  • 51.51
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.45e4
  • 1.45e4
51.48
  • 51.48
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.57e4
  • 1.57e4
47.30
  • 47.30
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.65e4
  • 1.65e4
44.88
  • 44.88
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.67e4
  • 1.67e4
  • 1.78e4
  • 1.92e4
44.05
  • 44.05
  • 40.25
  • 35.73
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.89e4
  • 1.89e4
36.81
  • 36.81
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.99e4
  • 1.99e4
33.53
  • 33.53
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.03e4
  • 2.03e4
32.09
  • 32.09
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Cross-references

EnsemblENSDARG00000016536 (npas2)
ZFINZDB-GENE-030408-3 (npas2)
EMBLAB087255, BC163256, CU464080
Uniprot/SPTREMBLQ8JIG3, Q8JIG3_DANRE

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