D. rerio Gene: CRAT (1 to many) - ENSDARG00000016545 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000016545
NameCRAT (1 to many)
Descriptionzgc:154046 [Source:ZFIN;Acc:ZDB-GENE-061103-289]
OrganismDanio rerio (zebrafish)
Synonym(s)cat1
Orthologs(s)12 orthologs
Paralog(s)10 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.21e3
  • 1.21e3
95.97
  • 95.97
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.80e3
  • 1.80e3
  • 9.36e3
93.99
  • 93.99
  • 68.65
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.12e3
  • 3.12e3
89.56
  • 89.56
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
4.36e3
  • 4.36e3
85.42
  • 85.42
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.52e3
  • 5.52e3
81.51
  • 81.51
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
5.64e3
  • 5.64e3
  • 8.00e3
81.10
  • 81.10
  • 73.23
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
5.86e3
  • 5.86e3
  • 1.41e4
80.37
  • 80.37
  • 52.92
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
6.37e3
  • 6.37e3
  • 8.00e3
  • 9.31e3
  • 1.08e4
  • 1.42e4
78.68
  • 78.68
  • 73.20
  • 68.81
  • 63.70
  • 52.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
6.58e3
  • 6.58e3
77.98
  • 77.98
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
7.93e3
  • 7.93e3
73.43
  • 73.43
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
8.86e3
  • 8.86e3
70.34
  • 70.34
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
9.70e3
  • 9.70e3
67.51
  • 67.51
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.76
  • 65.76
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.03e4
  • 1.03e4
  • 1.13e4
65.40
  • 65.40
  • 62.30
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.05e4
  • 1.05e4
64.98
  • 64.98
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.61
  • 62.61
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
59.55
  • 59.55
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.23e4
  • 1.23e4
58.67
  • 58.67
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.25e4
  • 1.25e4
58.06
  • 58.06
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.45e4
  • 1.45e4
  • 1.50e4
51.41
  • 51.41
  • 49.92
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.59e4
  • 1.59e4
46.80
  • 46.80
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.70e4
  • 1.70e4
42.93
  • 42.93
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Orthology information comes from OMA : ENSDARG00000016545.

Paralogs (same species)

Cross-references

EnsemblENSDARG00000016545 (CRAT (1 to many))
HGNCHGNC:2342 (CRAT (1 to many))
ZFINZDB-GENE-061103-289 (zgc:154046)
EMBLBC125941, BX005065
Uniprot/SPTREMBLA0JMN2, A0JMN2_DANRE, F1QSB0, F1QSB0_DANRE

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