D. rerio Gene: si:ch211-195b13.1 - ENSDARG00000016623 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000016623
Namesi:ch211-195b13.1
Descriptionsi:ch211-195b13.1 [Source:ZFIN;Acc:ZDB-GENE-030131-7626]
OrganismDanio rerio (zebrafish)
Synonym(s)fk56c04, wu:fk56c04, zgc:154030
Paralog(s)18 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
161
  • 161
  • 581
  • 1.05e4
  • 1.20e4
99.46
  • 99.46
  • 98.06
  • 64.99
  • 59.69
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
756
  • 756
97.47
  • 97.47
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000106zygote stage
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
1.16e3
  • 1.16e3
  • 2.39e3
  • 3.47e3
  • 3.53e3
  • 5.50e3
  • 5.75e3
  • 6.93e3
  • 7.75e3
  • 8.14e3
  • 8.65e3
  • 8.91e3
  • 1.07e4
  • 1.07e4
  • 1.24e4
  • 1.42e4
  • 1.50e4
96.11
  • 96.11
  • 91.99
  • 88.40
  • 88.17
  • 81.59
  • 80.74
  • 76.80
  • 74.06
  • 72.76
  • 71.03
  • 70.18
  • 64.20
  • 64.03
  • 58.43
  • 52.43
  • 49.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
1.23e3
  • 1.23e3
  • 8.54e3
  • 1.45e4
95.88
  • 95.88
  • 71.40
  • 51.33
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.71e3
  • 1.71e3
94.29
  • 94.29
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.07e3
  • 2.07e3
93.09
  • 93.09
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
2.12e3
  • 2.12e3
  • 8.21e3
  • 9.64e3
  • 9.67e3
  • 1.15e4
  • 1.17e4
  • 1.22e4
  • 1.27e4
  • 1.27e4
  • 1.28e4
92.91
  • 92.91
  • 72.49
  • 67.72
  • 67.62
  • 61.57
  • 60.95
  • 59.31
  • 57.48
  • 57.37
  • 57.09
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.40e3
  • 2.40e3
91.96
  • 91.96
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
2.45e3
  • 2.45e3
  • 3.85e3
  • 5.72e3
91.81
  • 91.81
  • 87.10
  • 80.83
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
2.65e3
  • 2.65e3
91.14
  • 91.14
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.23e3
  • 3.23e3
89.17
  • 89.17
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.31e3
  • 3.31e3
88.91
  • 88.91
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
4.75e3
  • 4.75e3
  • 7.15e3
84.11
  • 84.11
  • 76.07
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
5.92e3
  • 5.92e3
80.17
  • 80.17
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.00e3
  • 6.00e3
79.90
  • 79.90
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
6.19e3
  • 6.19e3
  • 7.05e3
  • 7.58e3
  • 9.25e3
  • 1.06e4
  • 1.13e4
79.28
  • 79.28
  • 76.41
  • 74.61
  • 69.02
  • 64.59
  • 62.21
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
6.25e3
  • 6.25e3
79.08
  • 79.08
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
6.68e3
  • 6.68e3
  • 6.70e3
  • 1.07e4
  • 1.31e4
  • 1.32e4
77.65
  • 77.65
  • 77.57
  • 64.24
  • 56.17
  • 55.94
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
7.09e3
  • 7.09e3
76.26
  • 76.26
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.28e3
  • 7.28e3
75.63
  • 75.63
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
7.39e3
  • 7.39e3
  • 1.31e4
75.27
  • 75.27
  • 56.28
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.30e3
  • 8.30e3
72.21
  • 72.21
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
8.35e3
  • 8.35e3
72.03
  • 72.03
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
61.94
  • 61.94
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.16e4
  • 1.16e4
61.18
  • 61.18
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.18e4
  • 1.18e4
60.63
  • 60.63
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.56
  • 60.56
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.26e4
  • 1.26e4
57.78
  • 57.78
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.29e4
  • 1.29e4
56.74
  • 56.74
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
  • 1.42e4
55.16
  • 55.16
  • 52.57
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.65e4
  • 1.65e4
44.88
  • 44.88
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.65e4
  • 1.65e4
44.73
  • 44.73
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Paralogs (same species)

Cross-references

EnsemblENSDARG00000016623 (si:ch211-195b13.1)
ZFINZDB-GENE-030131-7626 (si:ch211-195b13.1)
EMBLBX530721
Uniprot/SPTREMBLA3KQ53, A3KQ53_DANRE

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