D. rerio Gene: TRIM35 (1 to many) - ENSDARG00000016674 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000016674
NameTRIM35 (1 to many)
Descriptionsi:ch73-166o21.1 [Source:ZFIN;Acc:ZDB-GENE-131120-76]
OrganismDanio rerio (zebrafish)
Synonym(s)hls5, kiaa1098, mair
Orthologs(s)2 orthologs
Paralog(s)28 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
6.08e3
  • 6.08e3
  • 8.20e3
79.65
  • 79.65
  • 72.55
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
6.78e3
  • 6.78e3
77.30
  • 77.30
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
8.33e3
  • 8.33e3
72.13
  • 72.13
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
8.73e3
  • 8.73e3
70.77
  • 70.77
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
9.16e3
  • 9.16e3
  • 1.63e4
69.33
  • 69.33
  • 45.27
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
9.28e3
  • 9.28e3
68.92
  • 68.92
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
9.50e3
  • 9.50e3
68.18
  • 68.18
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.97
  • 65.97
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.65
  • 63.65
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.57
  • 60.57
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
60.16
  • 60.16
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.35e4
  • 1.35e4
54.89
  • 54.89
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.58
  • 54.58
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.82
  • 50.82
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.49e4
  • 1.49e4
50.03
  • 50.03
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.52e4
  • 1.52e4
49.26
  • 49.26
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.86e4
  • 1.86e4
37.83
  • 37.83
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
1.92e4
  • 1.92e4
35.69
  • 35.69
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.98e4
  • 1.98e4
33.63
  • 33.63
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.20e4
  • 2.20e4
  • 2.25e4
26.17
  • 26.17
  • 24.52
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.23e4
  • 2.23e4
25.48
  • 25.48
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi2 species2 genesCompare expression

Orthology information comes from OMA : ENSDARG00000016674.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Clupeocephala26 genesCompare expression
Euteleostomi28 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000016674.

Cross-references

EnsemblENSDARG00000016674 (TRIM35 (1 to many))
HGNCHGNC:16285 (TRIM35 (1 to many))
ZFINZDB-GENE-131120-76 (si:ch73-166o21.1)
EMBLFP102888
Uniprot/SPTREMBLX1WCD1, X1WCD1_DANRE

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