D. rerio Gene: rchy1 - ENSDARG00000016710 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000016710
Namerchy1
Descriptionring finger and CHY zinc finger domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040801-73]
OrganismDanio rerio (zebrafish)
Synonym(s)wu:fb37e07, zfp363, zgc:101128

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.35e3
  • 1.35e3
95.42831
  • 95.42831
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.22e3
  • 2.22e3
92.51503
  • 92.51503
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.30e3
  • 2.30e3
92.22618
  • 92.22618
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.54e3
  • 2.54e3
91.40824
  • 91.40824
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.73e3
  • 2.73e3
90.78296
  • 90.78296
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.99e3
  • 2.99e3
89.88278
  • 89.88278
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
3.18e3
  • 3.18e3
  • 7.27e3
89.25028
  • 89.25028
  • 75.44826
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.26e3
  • 3.26e3
88.97808
  • 88.97808
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
3.54e3
  • 3.54e3
  • 3.66e3
  • 4.84e3
  • 5.36e3
  • 5.59e3
  • 7.88e3
  • 7.89e3
  • 8.99e3
  • 9.91e3
  • 1.09e4
88.03593
  • 88.03593
  • 87.63625
  • 83.64119
  • 81.89201
  • 81.12294
  • 73.37715
  • 73.32583
  • 69.60418
  • 66.50523
  • 63.12082
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.84e3
  • 3.84e3
87.02449
  • 87.02449
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
4.38e3
  • 4.38e3
  • 7.88e3
  • 8.15e3
85.19164
  • 85.19164
  • 73.37201
  • 72.46969
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • UBERON:0000106zygote stage
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
4.97e3
  • 4.97e3
  • 6.35e3
  • 6.46e3
  • 7.01e3
  • 7.05e3
  • 7.74e3
  • 8.36e3
  • 8.43e3
  • 8.73e3
  • 9.23e3
  • 9.37e3
  • 9.69e3
  • 9.85e3
  • 1.09e4
  • 1.45e4
  • 1.45e4
83.21200
  • 83.21200
  • 78.53663
  • 78.15983
  • 76.31647
  • 76.17143
  • 73.82658
  • 71.73095
  • 71.51561
  • 70.49611
  • 68.81937
  • 68.32423
  • 67.24411
  • 66.70363
  • 63.30129
  • 51.00857
  • 50.89926
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
4.99e3
  • 4.99e3
  • 7.08e3
83.13827
  • 83.13827
  • 76.07149
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.75e3
  • 5.75e3
80.55363
  • 80.55363
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
5.85e3
  • 5.85e3
80.24437
  • 80.24437
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
6.06e3
  • 6.06e3
79.52783
  • 79.52783
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
6.12e3
  • 6.12e3
79.31309
  • 79.31309
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
6.59e3
  • 6.59e3
77.72249
  • 77.72249
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
6.72e3
  • 6.72e3
77.29303
  • 77.29303
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
6.84e3
  • 6.84e3
76.89938
  • 76.89938
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
7.20e3
  • 7.20e3
75.66120
  • 75.66120
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
7.45e3
  • 7.45e3
74.82168
  • 74.82168
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
7.62e3
  • 7.62e3
  • 9.52e3
74.26053
  • 74.26053
  • 67.82929
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
7.70e3
  • 7.70e3
  • 8.12e3
  • 9.52e3
73.98425
  • 73.98425
  • 72.57344
  • 67.82026
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
8.00e3
  • 8.00e3
  • 8.63e3
  • 8.75e3
  • 8.81e3
  • 9.20e3
72.95699
  • 72.95699
  • 70.81963
  • 70.41617
  • 70.21959
  • 68.91775
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
9.98e3
  • 9.98e3
66.25826
  • 66.25826
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.04e4
  • 1.04e4
  • 1.08e4
  • 1.10e4
65.01374
  • 65.01374
  • 63.66167
  • 62.72165
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.04e4
  • 1.04e4
64.78597
  • 64.78597
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.05e4
  • 1.05e4
64.44432
  • 64.44432
AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.14e4
  • 1.14e4
  • 1.18e4
  • 1.23e4
  • 1.30e4
  • 1.31e4
  • 1.33e4
  • 1.33e4
  • 1.35e4
  • 1.35e4
61.52495
  • 61.52495
  • 59.96958
  • 58.31981
  • 56.22973
  • 55.86038
  • 54.97294
  • 54.97294
  • 54.51503
  • 54.51503
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004880chordamesoderm
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
1.23e4
  • 1.23e4
  • 1.25e4
  • 1.25e4
  • 1.35e4
  • 1.35e4
  • 1.35e4
58.31981
  • 58.31981
  • 57.67708
  • 57.67708
  • 54.53193
  • 54.53193
  • 54.53193
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003079floor plate
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
1.25e4
  • 1.25e4
  • 1.30e4
  • 1.36e4
  • 1.48e4
  • 1.48e4
57.67708
  • 57.67708
  • 56.22973
  • 54.15145
  • 49.98310
  • 49.98141
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005426lens vesicle
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
1.31e4
  • 1.31e4
  • 1.33e4
  • 1.39e4
55.86038
  • 55.86038
  • 54.97294
  • 53.10304
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.32e4
  • 1.32e4
  • 1.33e4
55.23779
  • 55.23779
  • 54.97294
AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.33e4
  • 1.33e4
55.16372
  • 55.16372
AEIR
  • AEIR
UBERON:0004741cleithrum
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.36e4
  • 1.36e4
  • 1.48e4
54.15145
  • 54.15145
  • 49.98479
AEIR
  • AEIR
  • AEIR
UBERON:0008895splanchnocranium
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.48e4
  • 1.48e4
  • 1.48e4
49.98986
  • 49.98986
  • 49.98986
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLAL845369
EnsemblENSDARG00000016710 (rchy1)
Uniprot/SPTREMBLA2ARH1, A2ARH1_DANRE
ZFINZDB-GENE-040801-73 (rchy1)

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