D. rerio Gene: rchy1 - ENSDARG00000016710 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000016710
Namerchy1
Descriptionring finger and CHY zinc finger domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040801-73]
OrganismDanio rerio (zebrafish)
Synonym(s)wu:fb37e07, zfp363, zgc:101128
Orthologs(s)20 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.35e3
  • 1.35e3
95.47
  • 95.47
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.22e3
  • 2.22e3
92.58
  • 92.58
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.30e3
  • 2.30e3
92.30
  • 92.30
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.54e3
  • 2.54e3
91.49
  • 91.49
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.73e3
  • 2.73e3
90.87
  • 90.87
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.99e3
  • 2.99e3
89.98
  • 89.98
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
3.18e3
  • 3.18e3
  • 7.27e3
89.35
  • 89.35
  • 75.68
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.26e3
  • 3.26e3
89.08
  • 89.08
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
3.29e3
  • 3.29e3
  • 3.55e3
  • 4.84e3
  • 5.36e3
  • 5.63e3
  • 7.91e3
  • 7.93e3
  • 9.06e3
  • 9.98e3
  • 1.10e4
89.00
  • 89.00
  • 88.12
  • 83.79
  • 82.06
  • 81.16
  • 73.51
  • 73.43
  • 69.67
  • 66.58
  • 63.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
3.52e3
  • 3.52e3
  • 7.13e3
88.21
  • 88.21
  • 76.12
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
3.64e3
  • 3.64e3
87.83
  • 87.83
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
4.28e3
  • 4.28e3
  • 4.29e3
  • 8.70e3
  • 8.82e3
  • 8.88e3
  • 9.26e3
85.68
  • 85.68
  • 85.65
  • 70.88
  • 70.48
  • 70.28
  • 68.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
4.41e3
  • 4.41e3
  • 7.94e3
  • 8.20e3
  • 9.73e3
85.22
  • 85.22
  • 73.43
  • 72.53
  • 67.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
4.46e3
  • 4.46e3
  • 7.50e3
85.08
  • 85.08
  • 74.88
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • UBERON:0000106zygote stage
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
5.00e3
  • 5.00e3
  • 6.40e3
  • 6.51e3
  • 7.06e3
  • 7.10e3
  • 7.80e3
  • 8.42e3
  • 8.49e3
  • 8.79e3
  • 9.29e3
  • 9.44e3
  • 9.76e3
  • 9.92e3
  • 1.09e4
  • 1.46e4
  • 1.47e4
83.25
  • 83.25
  • 78.58
  • 78.21
  • 76.37
  • 76.22
  • 73.88
  • 71.79
  • 71.58
  • 70.56
  • 68.89
  • 68.39
  • 67.31
  • 66.78
  • 63.38
  • 51.01
  • 50.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.19e3
  • 5.19e3
82.61
  • 82.61
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.56e3
  • 5.56e3
81.38
  • 81.38
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
5.83e3
  • 5.83e3
  • 8.12e3
  • 1.11e4
80.47
  • 80.47
  • 72.80
  • 62.80
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
5.85e3
  • 5.85e3
80.43
  • 80.43
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
6.06e3
  • 6.06e3
79.72
  • 79.72
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
6.17e3
  • 6.17e3
79.36
  • 79.36
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
6.45e3
  • 6.45e3
  • 6.72e3
  • 7.75e3
  • 8.17e3
  • 9.59e3
78.42
  • 78.42
  • 77.51
  • 74.04
  • 72.63
  • 67.89
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
6.64e3
  • 6.64e3
77.77
  • 77.77
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
6.76e3
  • 6.76e3
77.38
  • 77.38
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
6.88e3
  • 6.88e3
76.95
  • 76.95
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
7.20e3
  • 7.20e3
75.89
  • 75.89
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.66e3
  • 7.66e3
74.34
  • 74.34
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
7.67e3
  • 7.67e3
  • 9.59e3
74.32
  • 74.32
  • 67.90
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
9.66e3
  • 9.66e3
67.65
  • 67.65
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
9.98e3
  • 9.98e3
66.57
  • 66.57
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.05e4
  • 1.05e4
64.86
  • 64.86
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.06e4
  • 1.06e4
64.52
  • 64.52
AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.15e4
  • 1.15e4
  • 1.20e4
  • 1.24e4
  • 1.31e4
  • 1.32e4
  • 1.34e4
  • 1.34e4
  • 1.36e4
  • 1.36e4
61.53
  • 61.53
  • 59.97
  • 58.32
  • 56.23
  • 55.86
  • 54.97
  • 54.97
  • 54.52
  • 54.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004880chordamesoderm
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
1.24e4
  • 1.24e4
  • 1.26e4
  • 1.26e4
  • 1.36e4
  • 1.36e4
  • 1.36e4
58.32
  • 58.32
  • 57.68
  • 57.68
  • 54.53
  • 54.53
  • 54.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003079floor plate
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
1.26e4
  • 1.26e4
  • 1.31e4
  • 1.37e4
  • 1.49e4
  • 1.49e4
57.68
  • 57.68
  • 56.23
  • 54.15
  • 49.98
  • 49.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
55.88
  • 55.88
AEIR
  • AEIR
UBERON:0005426lens vesicle
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
1.32e4
  • 1.32e4
  • 1.34e4
  • 1.40e4
55.86
  • 55.86
  • 54.97
  • 53.10
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.34e4
  • 1.34e4
  • 1.34e4
55.24
  • 55.24
  • 54.97
AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.34e4
  • 1.34e4
55.16
  • 55.16
AEIR
  • AEIR
UBERON:0004741cleithrum
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.37e4
  • 1.37e4
  • 1.49e4
54.15
  • 54.15
  • 49.98
AEIR
  • AEIR
  • AEIR
UBERON:0008895splanchnocranium
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
  • 1.49e4
49.99
  • 49.99
  • 49.99
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species18 genesCompare expression
Bilateria20 species20 genesCompare expression

Orthology information comes from OMA : ENSDARG00000016710.

Cross-references

EnsemblENSDARG00000016710 (rchy1)
ZFINZDB-GENE-040801-73 (rchy1)
EMBLAL845369
Uniprot/SPTREMBLA2ARH1, A2ARH1_DANRE

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