D. rerio Gene: casc1 - ENSDARG00000016815 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000016815
Namecasc1
Descriptioncancer susceptibility candidate 1 [Source:ZFIN;Acc:ZDB-GENE-041210-153]
OrganismDanio rerio (zebrafish)
Synonym(s)si:dkey-172o10.5
Orthologs(s)16 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.24e3
  • 2.24e3
92.50
  • 92.50
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000033Hatching:Long-pec
1.07e4
  • 1.07e4
64.27
  • 64.27
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.35e4
  • 1.35e4
54.69
  • 54.69
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
49.68
  • 49.68
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
1.63e4
  • 1.63e4
  • 1.63e4
  • 1.72e4
  • 2.00e4
  • 2.10e4
45.43
  • 45.43
  • 45.38
  • 42.49
  • 33.13
  • 29.79
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.68e4
  • 1.68e4
43.86
  • 43.86
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.79e4
  • 1.79e4
39.90
  • 39.90
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.84e4
  • 1.84e4
  • 2.19e4
38.53
  • 38.53
  • 26.75
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.85e4
  • 1.85e4
38.03
  • 38.03
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.89e4
  • 1.89e4
36.74
  • 36.74
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
1.95e4
  • 1.95e4
34.73
  • 34.73
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.04e4
  • 2.04e4
31.73
  • 31.73
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.05e4
  • 2.05e4
31.26
  • 31.26
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.24e4
  • 2.24e4
25.10
  • 25.10
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Cross-references

EnsemblENSDARG00000016815 (casc1)
ZFINZDB-GENE-041210-153 (casc1)
EMBLBX547928
Uniprot/SPTREMBLF1R213, F1R213_DANRE, T1ECS4, T1ECS4_DANRE

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