D. rerio Gene: rimkla - ENSDARG00000016830 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000016830
Namerimkla
Descriptionribosomal modification protein rimK-like family member A [Source:ZFIN;Acc:ZDB-GENE-040912-20]
OrganismDanio rerio (zebrafish)
Synonym(s)fam80b, naags, rimklb, wu:fc60e09, zgc:92164

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
508
  • 508
  • 804
  • 810
  • 1.27e3
  • 1.33e3
98.30
  • 98.30
  • 97.31
  • 97.29
  • 95.76
  • 95.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
619
  • 619
  • 3.13e3
97.93
  • 97.93
  • 89.54
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
804
  • 804
  • 950
  • 1.57e3
  • 2.13e3
  • 2.22e3
  • 2.33e3
  • 2.41e3
  • 2.42e3
  • 2.43e3
  • 2.50e3
  • 2.79e3
  • 2.98e3
  • 3.11e3
  • 4.19e3
  • 1.41e4
  • 1.44e4
  • 1.49e4
97.31
  • 97.31
  • 96.82
  • 94.73
  • 92.86
  • 92.56
  • 92.20
  • 91.93
  • 91.89
  • 91.88
  • 91.65
  • 90.66
  • 90.02
  • 89.59
  • 85.97
  • 52.87
  • 51.88
  • 50.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
812
  • 812
  • 1.22e3
  • 1.34e3
  • 6.69e3
97.28
  • 97.28
  • 95.93
  • 95.52
  • 77.60
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
932
  • 932
  • 1.23e3
  • 1.43e3
  • 1.60e3
  • 1.92e3
  • 2.11e3
96.88
  • 96.88
  • 95.88
  • 95.21
  • 94.65
  • 93.59
  • 92.94
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
965
  • 965
  • 3.46e3
  • 1.45e4
96.77
  • 96.77
  • 88.43
  • 51.33
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000024Segmentation:5-9 somites
999
  • 999
  • 1.25e3
  • 1.62e3
  • 1.75e3
  • 1.81e3
  • 1.96e3
  • 2.06e3
  • 2.54e3
  • 3.21e3
  • 3.22e3
96.66
  • 96.66
  • 95.83
  • 94.59
  • 94.15
  • 93.94
  • 93.46
  • 93.10
  • 91.49
  • 89.27
  • 89.21
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.06e3
  • 1.06e3
96.45
  • 96.45
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.12e3
  • 1.12e3
96.25
  • 96.25
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.32e3
  • 1.32e3
95.57
  • 95.57
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.37e3
  • 1.37e3
95.42
  • 95.42
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.43e3
  • 1.43e3
95.23
  • 95.23
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
1.89e3
  • 1.89e3
  • 2.49e3
  • 2.51e3
93.68
  • 93.68
  • 91.68
  • 91.60
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
2.41e3
  • 2.41e3
91.92
  • 91.92
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.48e3
  • 2.48e3
91.68
  • 91.68
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
2.49e3
  • 2.49e3
91.67
  • 91.67
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.98e3
  • 2.98e3
90.03
  • 90.03
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.31e3
  • 3.31e3
88.91
  • 88.91
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
3.82e3
  • 3.82e3
87.21
  • 87.21
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
3.97e3
  • 3.97e3
  • 8.40e3
86.71
  • 86.71
  • 71.89
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
4.34e3
  • 4.34e3
85.48
  • 85.48
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
4.79e3
  • 4.79e3
  • 8.72e3
83.96
  • 83.96
  • 70.79
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
4.94e3
  • 4.94e3
83.47
  • 83.47
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
5.58e3
  • 5.58e3
81.31
  • 81.31
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.65e3
  • 5.65e3
81.07
  • 81.07
AEIR
  • AEIR
UBERON:0001846internal ear
  • UBERON:0000068embryo stage
6.09e3
  • 6.09e3
79.60
  • 79.60
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
7.58e3
  • 7.58e3
74.62
  • 74.62
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
7.94e3
  • 7.94e3
73.41
  • 73.41
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.70e3
  • 8.70e3
70.87
  • 70.87
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
8.81e3
  • 8.81e3
70.51
  • 70.51
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
9.12e3
  • 9.12e3
69.45
  • 69.45
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
65.32
  • 65.32
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
  • 1.42e4
55.16
  • 55.16
  • 52.57
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.35e4
  • 1.35e4
54.65
  • 54.65
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
53.99
  • 53.99
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Cross-references

EnsemblENSDARG00000016830 (rimkla)
ZFINZDB-GENE-040912-20 (rimkla)
EMBLBC081615
Uniprot/SPTREMBLF1Q7A0, F1Q7A0_DANRE, F1QZ76, F1QZ76_DANRE
Uniprot/SWISSPROTQ66HZ2, RIMKB_DANRE

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