D. rerio Gene: tcirg1a - ENSDARG00000016835 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000016835
Nametcirg1a
DescriptionT-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3a [Source:ZFIN;Acc:ZDB-GENE-090311-31]
OrganismDanio rerio (zebrafish)
Synonym(s)f1r9q4, si:dkey-9i23.9, tcirg1
Orthologs(s)16 orthologs
Paralog(s)6 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
7.88e3
  • 7.88e3
73.61
  • 73.61
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
8.40e3
  • 8.40e3
  • 1.28e4
71.87
  • 71.87
  • 57.10
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
8.62e3
  • 8.62e3
  • 1.45e4
  • 1.52e4
  • 1.69e4
  • 1.77e4
71.14
  • 71.14
  • 51.60
  • 49.09
  • 43.30
  • 40.84
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
8.68e3
  • 8.68e3
70.94
  • 70.94
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
9.20e3
  • 9.20e3
69.19
  • 69.19
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.09e4
  • 1.09e4
  • 1.61e4
63.47
  • 63.47
  • 46.19
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.57
  • 62.57
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.13e4
  • 1.13e4
62.19
  • 62.19
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.27
  • 58.27
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.30e4
  • 1.30e4
  • 1.42e4
56.42
  • 56.42
  • 52.45
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.30e4
  • 1.30e4
56.32
  • 56.32
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
55.12
  • 55.12
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
52.96
  • 52.96
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.55e4
  • 1.55e4
48.03
  • 48.03
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.56e4
  • 1.56e4
47.73
  • 47.73
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.57e4
  • 1.57e4
47.53
  • 47.53
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.62e4
  • 1.62e4
45.85
  • 45.85
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.65e4
  • 1.65e4
44.62
  • 44.62
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
1.66e4
  • 1.66e4
  • 1.71e4
44.46
  • 44.46
  • 42.75
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
44.20
  • 44.20
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
1.69e4
  • 1.69e4
  • 1.83e4
43.44
  • 43.44
  • 38.65
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
42.33
  • 42.33
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.73e4
  • 1.73e4
42.10
  • 42.10
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.26
  • 41.26
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.92e4
  • 1.92e4
35.68
  • 35.68
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Neopterygii1 geneCompare expression
Opisthokonta6 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000016835.

Cross-references

EnsemblENSDARG00000016835 (tcirg1a)
ZFINZDB-GENE-090311-31 (tcirg1a)
EMBLBX901937
Uniprot/SPTREMBLB8A655, B8A655_DANRE

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