D. rerio Gene: itgb2 - ENSDARG00000016939 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000016939
Nameitgb2
Descriptionintegrin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-110411-4]
OrganismDanio rerio (zebrafish)
Synonym(s)si:dkey-260n18.4
Orthologs(s)25 orthologs
Paralog(s)8 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
268
  • 268
99.11
  • 99.11
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
579
  • 579
98.06
  • 98.06
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
805
  • 805
97.31
  • 97.31
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.63e3
  • 1.63e3
94.55
  • 94.55
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.20e3
  • 2.20e3
92.64
  • 92.64
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
3.57e3
  • 3.57e3
  • 1.42e4
88.04
  • 88.04
  • 52.56
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.69e3
  • 3.69e3
87.65
  • 87.65
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
3.94e3
  • 3.94e3
  • 1.95e4
86.81
  • 86.81
  • 34.76
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.23e3
  • 4.23e3
85.85
  • 85.85
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.68e3
  • 4.68e3
84.34
  • 84.34
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
4.83e3
  • 4.83e3
83.82
  • 83.82
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
5.07e3
  • 5.07e3
83.01
  • 83.01
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
7.12e3
  • 7.12e3
76.16
  • 76.16
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
7.92e3
  • 7.92e3
73.48
  • 73.48
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
9.10e3
  • 9.10e3
69.52
  • 69.52
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
9.24e3
  • 9.24e3
  • 1.79e4
  • 1.81e4
  • 1.83e4
  • 1.83e4
  • 1.83e4
69.05
  • 69.05
  • 40.18
  • 39.42
  • 38.72
  • 38.62
  • 38.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
9.84e3
  • 9.84e3
67.06
  • 67.06
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.17e4
  • 1.17e4
  • 1.43e4
60.69
  • 60.69
  • 52.23
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.51e4
  • 1.51e4
49.29
  • 49.29
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.68e4
  • 1.68e4
  • 1.77e4
  • 1.84e4
43.76
  • 43.76
  • 40.64
  • 38.45
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
1.71e4
  • 1.71e4
  • 1.77e4
  • 1.78e4
  • 1.79e4
  • 1.80e4
  • 1.90e4
42.67
  • 42.67
  • 40.65
  • 40.56
  • 40.18
  • 39.74
  • 36.39
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.81e4
  • 1.81e4
39.35
  • 39.35
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi17 species18 genesCompare expression
Bilateria24 species25 genesCompare expression

Orthology information comes from OMA : ENSDARG00000016939.

Paralogs (same species)

Cross-references

EnsemblENSDARG00000016939 (itgb2)
ZFINZDB-GENE-110411-4 (itgb2)
EMBLBX510317, BX571855
Uniprot/SPTREMBLE7FCN5, E7FCN5_DANRE

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