D. rerio Gene: slc16a1a - ENSDARG00000016963 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000016963
Nameslc16a1a
Descriptionsolute carrier family 16 (monocarboxylate transporter), member 1a [Source:ZFIN;Acc:ZDB-GENE-110408-16]
OrganismDanio rerio (zebrafish)
Synonym(s)mct1b, si:ch211-105j21.7, si:ch211-105j21.7 {eco:0000313|ensembl:ensdarp00000023170,gn eco:0000313|zfin:zdb-gene-110408-16}, slc16a1b
Orthologs(s)21 orthologs
Paralog(s)19 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.54e3
  • 2.54e3
91.50
  • 91.50
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.74e3
  • 2.74e3
90.81
  • 90.81
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
4.42e3
  • 4.42e3
85.19
  • 85.19
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
4.43e3
  • 4.43e3
85.18
  • 85.18
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.56e3
  • 6.56e3
78.02
  • 78.02
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
7.09e3
  • 7.09e3
76.27
  • 76.27
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
8.72e3
  • 8.72e3
  • 1.36e4
70.80
  • 70.80
  • 54.47
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
65.02
  • 65.02
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
  • 1.37e4
63.40
  • 63.40
  • 54.17
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.51
  • 60.51
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.18e4
  • 1.18e4
  • 1.57e4
60.39
  • 60.39
  • 47.35
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.76
  • 59.76
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.23e4
  • 1.23e4
  • 1.89e4
58.75
  • 58.75
  • 36.61
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.27e4
  • 1.27e4
57.59
  • 57.59
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
56.19
  • 56.19
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.35e4
  • 1.35e4
54.69
  • 54.69
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
1.43e4
  • 1.43e4
  • 1.61e4
  • 1.83e4
  • 1.96e4
  • 2.02e4
52.16
  • 52.16
  • 46.02
  • 38.71
  • 34.42
  • 32.40
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.54e4
  • 1.54e4
48.50
  • 48.50
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.56e4
  • 1.56e4
47.78
  • 47.78
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
1.67e4
  • 1.67e4
44.01
  • 44.01
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.76e4
  • 1.76e4
41.04
  • 41.04
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Euteleostomi1 geneCompare expression
Chordata10 genesCompare expression
Opisthokonta19 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000016963.

Cross-references

EnsemblENSDARG00000016963 (slc16a1a)
ZFINZDB-GENE-110408-16 (slc16a1a)
EMBLAL954307, BX005150, BX005262
Uniprot/SPTREMBLE7F7B3, E7F7B3_DANRE

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