D. rerio Gene: snx27b - ENSDARG00000016977 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000016977
Namesnx27b
Descriptionsorting nexin family member 27b [Source:ZFIN;Acc:ZDB-GENE-040426-1529]
OrganismDanio rerio (zebrafish)
Synonym(s)snx27, snx27 {eco:0000313|embl:aah63999.1,gn eco:0000313|zfin:zdb-gene-040426-1529}, zgc:66094, zgc:77922

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
2.96e3
  • 2.96e3
90.01004
  • 90.01004
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
4.13e3
  • 4.13e3
  • 5.56e3
  • 8.57e3
  • 9.49e3
  • 9.58e3
  • 9.86e3
  • 9.89e3
  • 1.02e4
  • 1.05e4
  • 1.06e4
  • 1.06e4
  • 1.08e4
  • 1.10e4
  • 1.16e4
  • 1.39e4
  • 1.43e4
  • 1.45e4
86.04016
  • 86.04016
  • 81.20961
  • 71.03871
  • 67.94208
  • 67.63296
  • 66.66379
  • 66.58523
  • 65.41602
  • 64.59917
  • 64.29571
  • 64.26267
  • 63.62665
  • 62.97927
  • 60.91631
  • 52.86343
  • 51.55493
  • 51.00857
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
4.63e3
  • 4.63e3
  • 1.05e4
84.36097
  • 84.36097
  • 64.44161
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
6.31e3
  • 6.31e3
  • 1.48e4
78.65990
  • 78.65990
  • 49.88846
AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • UBERON:0000106zygote stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000015Blastula:Dome
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000026Segmentation:14-19 somites
6.34e3
  • 6.34e3
  • 6.34e3
  • 6.34e3
  • 6.58e3
  • 6.83e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.89e3
  • 8.46e3
  • 8.46e3
  • 8.63e3
  • 8.71e3
  • 8.71e3
  • 8.88e3
  • 8.88e3
  • 9.05e3
  • 9.05e3
  • 9.05e3
  • 9.62e3
  • 9.87e3
  • 9.87e3
78.56975
  • 78.56975
  • 78.56975
  • 78.56975
  • 77.77439
  • 76.91633
  • 74.99829
  • 74.99829
  • 74.99829
  • 74.99829
  • 74.99829
  • 74.99829
  • 74.99829
  • 74.99829
  • 74.99829
  • 74.99829
  • 74.99829
  • 74.99829
  • 73.32320
  • 71.42518
  • 71.41166
  • 70.82487
  • 70.57472
  • 70.57472
  • 69.98817
  • 69.98310
  • 69.42923
  • 69.42923
  • 69.42923
  • 67.48142
  • 66.65990
  • 66.65314
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
6.50e3
  • 6.50e3
  • 8.90e3
  • 9.05e3
78.04826
  • 78.04826
  • 69.91653
  • 69.42718
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
6.79e3
  • 6.79e3
  • 9.34e3
  • 9.69e3
77.04737
  • 77.04737
  • 68.43794
  • 67.26081
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
6.81e3
  • 6.81e3
76.99711
  • 76.99711
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
6.95e3
  • 6.95e3
76.52984
  • 76.52984
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
7.21e3
  • 7.21e3
  • 7.66e3
  • 8.77e3
  • 1.07e4
  • 1.08e4
  • 1.11e4
  • 1.12e4
  • 1.14e4
  • 1.16e4
  • 1.24e4
75.64851
  • 75.64851
  • 74.10532
  • 70.35195
  • 63.97343
  • 63.56865
  • 62.58091
  • 62.28648
  • 61.49531
  • 60.76272
  • 58.06865
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
7.47e3
  • 7.47e3
74.76890
  • 74.76890
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.82e3
  • 7.82e3
73.58931
  • 73.58931
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
8.08e3
  • 8.08e3
  • 9.62e3
72.70581
  • 72.70581
  • 67.47308
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
8.56e3
  • 8.56e3
  • 9.83e3
  • 1.11e4
71.06900
  • 71.06900
  • 66.78664
  • 62.57107
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
8.74e3
  • 8.74e3
  • 1.12e4
  • 1.24e4
  • 1.24e4
  • 1.32e4
70.46768
  • 70.46768
  • 62.04678
  • 58.17011
  • 57.98577
  • 55.34227
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
8.78e3
  • 8.78e3
70.33885
  • 70.33885
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
8.82e3
  • 8.82e3
  • 9.08e3
70.18573
  • 70.18573
  • 69.32141
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
9.16e3
  • 9.16e3
69.05345
  • 69.05345
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
9.17e3
  • 9.17e3
69.02381
  • 69.02381
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
9.47e3
  • 9.47e3
68.01244
  • 68.01244
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
9.63e3
  • 9.63e3
67.44461
  • 67.44461
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
9.64e3
  • 9.64e3
67.41777
  • 67.41777
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
9.69e3
  • 9.69e3
67.24739
  • 67.24739
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.00e4
  • 1.00e4
66.19742
  • 66.19742
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
61.61628
  • 61.61628
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
60.62654
  • 60.62654
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
60.43804
  • 60.43804
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
57.87978
  • 57.87978
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
57.80170
  • 57.80170
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBC056315, BC063999, CR533578
EnsemblENSDARG00000016977 (snx27b)
Uniprot/SPTREMBLQ6P3G2, Q6P3G2_DANRE
ZFINZDB-GENE-040426-1529 (snx27b)

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