D. rerio Gene: lin28a - ENSDARG00000016999 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000016999
Namelin28a
Descriptionlin-28 homolog A (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-040426-747]
OrganismDanio rerio (zebrafish)
Synonym(s)lin28, q1lxl3, sb:cb650, zgc:55584

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
1.47e3
  • 1.47e3
  • 3.24e3
  • 5.82e3
  • 1.35e4
  • 1.41e4
  • 1.41e4
  • 1.41e4
  • 1.78e4
  • 1.81e4
  • 2.08e4
95.07
  • 95.07
  • 89.15
  • 80.52
  • 54.64
  • 52.82
  • 52.76
  • 52.71
  • 40.54
  • 39.27
  • 30.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
1.59e3
  • 1.59e3
  • 3.97e3
  • 7.25e3
  • 7.26e3
  • 7.83e3
  • 1.43e4
94.67
  • 94.67
  • 86.72
  • 75.73
  • 75.68
  • 73.80
  • 52.28
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
2.19e3
  • 2.19e3
  • 2.46e3
  • 1.10e4
  • 1.14e4
  • 1.15e4
92.66
  • 92.66
  • 91.78
  • 63.30
  • 61.97
  • 61.44
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
2.32e3
  • 2.32e3
92.22
  • 92.22
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.84e3
  • 2.84e3
90.48
  • 90.48
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.69e3
  • 3.69e3
87.65
  • 87.65
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
4.90e3
  • 4.90e3
83.59
  • 83.59
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.32e3
  • 5.32e3
82.21
  • 82.21
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.40e3
  • 5.40e3
81.93
  • 81.93
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
6.89e3
  • 6.89e3
  • 8.54e3
  • 8.79e3
  • 8.96e3
  • 9.13e3
  • 9.13e3
76.92
  • 76.92
  • 71.41
  • 70.57
  • 69.98
  • 69.43
  • 69.43
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.13e3
  • 7.13e3
76.14
  • 76.14
AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
7.47e3
  • 7.47e3
  • 8.54e3
  • 8.96e3
  • 1.02e4
  • 1.05e4
  • 1.05e4
74.99
  • 74.99
  • 71.42
  • 69.99
  • 65.77
  • 64.69
  • 64.69
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
8.34e3
  • 8.34e3
72.08
  • 72.08
AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
8.83e3
  • 8.83e3
  • 9.51e3
  • 9.61e3
  • 1.12e4
  • 1.12e4
  • 1.26e4
  • 1.32e4
70.44
  • 70.44
  • 68.16
  • 67.83
  • 62.48
  • 62.48
  • 57.87
  • 55.86
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000106zygote stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
8.96e3
  • 8.96e3
  • 1.10e4
  • 1.12e4
  • 1.15e4
  • 1.17e4
  • 1.33e4
  • 1.36e4
  • 1.65e4
  • 1.79e4
  • 1.80e4
  • 1.80e4
  • 1.81e4
  • 1.83e4
69.99
  • 69.99
  • 63.01
  • 62.49
  • 61.65
  • 60.69
  • 55.43
  • 54.39
  • 44.89
  • 40.15
  • 39.85
  • 39.77
  • 39.42
  • 38.62
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
8.96e3
  • 8.96e3
  • 9.10e3
  • 9.61e3
  • 1.05e4
  • 1.05e4
  • 1.07e4
69.98
  • 69.98
  • 69.55
  • 67.83
  • 64.98
  • 64.98
  • 64.26
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
9.28e3
  • 9.28e3
68.94
  • 68.94
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.71
  • 65.71
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.26e4
  • 1.26e4
57.66
  • 57.66
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.32e4
  • 1.32e4
55.71
  • 55.71
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
55.65
  • 55.65
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.50e4
  • 1.50e4
  • 2.07e4
49.65
  • 49.65
  • 30.82
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.60e4
  • 1.60e4
46.59
  • 46.59
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.65e4
  • 1.65e4
44.73
  • 44.73
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
2.31e4
  • 2.31e4
22.52
  • 22.52
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.50e4
  • 2.50e4
16.18
  • 16.18
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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