D. rerio Gene: nr2e1 - ENSDARG00000017107 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000017107
Namenr2e1
Descriptionnuclear receptor subfamily 2, group E, member 1 [Source:ZFIN;Acc:ZDB-GENE-040801-127]
OrganismDanio rerio (zebrafish)
Synonym(s)fc30e03, fc39f12, nr2d1, tll, wu:fc30e03, wu:fc39f12, zgc:100991
Orthologs(s)24 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
1.41e3
  • 1.41e3
  • 4.12e3
  • 4.98e3
  • 8.52e3
  • 9.10e3
  • 1.05e4
95.28
  • 95.28
  • 86.19
  • 83.33
  • 71.48
  • 69.55
  • 64.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
1.87e3
  • 1.87e3
  • 8.54e3
  • 1.09e4
  • 1.36e4
  • 1.49e4
93.75
  • 93.75
  • 71.42
  • 63.63
  • 54.53
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
2.13e3
  • 2.13e3
  • 9.96e3
  • 1.07e4
92.86
  • 92.86
  • 66.65
  • 64.27
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
3.73e3
  • 3.73e3
  • 6.64e3
  • 7.83e3
  • 8.65e3
  • 9.13e3
  • 9.44e3
  • 9.44e3
  • 1.05e4
87.50
  • 87.50
  • 77.77
  • 73.79
  • 71.04
  • 69.43
  • 68.40
  • 68.40
  • 64.69
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
4.07e3
  • 4.07e3
  • 4.98e3
  • 8.45e3
  • 8.83e3
  • 9.10e3
  • 9.34e3
  • 9.44e3
  • 1.14e4
  • 1.16e4
  • 1.49e4
86.36
  • 86.36
  • 83.33
  • 71.72
  • 70.44
  • 69.55
  • 68.73
  • 68.40
  • 61.75
  • 61.09
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000033Hatching:Long-pec
5.50e3
  • 5.50e3
  • 7.08e3
  • 7.86e3
  • 8.09e3
  • 9.13e3
  • 9.44e3
  • 1.24e4
  • 1.33e4
81.57
  • 81.57
  • 76.30
  • 73.67
  • 72.90
  • 69.43
  • 68.40
  • 58.33
  • 55.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000037Larval:Day 5
5.98e3
  • 5.98e3
  • 6.46e3
  • 6.55e3
  • 7.12e3
  • 7.66e3
  • 8.79e3
  • 1.05e4
  • 1.20e4
  • 1.23e4
  • 1.36e4
79.99
  • 79.99
  • 78.37
  • 78.06
  • 76.17
  • 74.37
  • 70.55
  • 64.79
  • 59.96
  • 58.84
  • 54.43
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000026Segmentation:14-19 somites
6.40e3
  • 6.40e3
78.56
  • 78.56
AEIR
  • AEIR
UBERON:0003053ventricular zone
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
6.89e3
  • 6.89e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 8.71e3
76.92
  • 76.92
  • 75.00
  • 74.99
  • 74.99
  • 70.82
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
7.18e3
  • 7.18e3
  • 2.06e4
75.95
  • 75.95
  • 30.96
AEIR
  • AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
7.91e3
  • 7.91e3
  • 9.67e3
  • 9.67e3
  • 1.24e4
  • 1.28e4
  • 1.31e4
73.52
  • 73.52
  • 67.63
  • 67.63
  • 58.32
  • 57.13
  • 56.23
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006222future diencephalon
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
8.71e3
  • 8.71e3
  • 9.19e3
  • 9.96e3
70.82
  • 70.82
  • 69.22
  • 66.66
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2001357alar plate midbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
8.96e3
  • 8.96e3
  • 9.44e3
  • 9.44e3
69.98
  • 69.98
  • 68.40
  • 68.40
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000068embryo stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000022Gastrula:Bud
8.99e3
  • 8.99e3
  • 1.03e4
  • 1.16e4
  • 1.16e4
  • 1.32e4
  • 1.36e4
  • 1.41e4
  • 1.59e4
  • 1.63e4
69.90
  • 69.90
  • 65.52
  • 61.24
  • 61.21
  • 55.96
  • 54.55
  • 52.63
  • 46.79
  • 45.58
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
9.51e3
  • 9.51e3
  • 1.35e4
  • 1.49e4
68.15
  • 68.15
  • 54.74
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0014371future telencephalon
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
9.60e3
  • 9.60e3
  • 1.03e4
  • 1.12e4
67.85
  • 67.85
  • 65.37
  • 62.49
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003065ciliary marginal zone
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
1.07e4
  • 1.07e4
  • 1.19e4
64.28
  • 64.28
  • 60.00
AEIR
  • AEIR
  • AEIR
UBERON:0004703dorsal thalamus
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
1.12e4
  • 1.12e4
  • 1.49e4
  • 1.49e4
62.50
  • 62.50
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
1.14e4
  • 1.14e4
  • 1.41e4
  • 1.52e4
61.82
  • 61.82
  • 52.95
  • 49.11
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001900ventral thalamus
  • ZFS:0000029Pharyngula:Prim-5
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
UBERON:0005425presumptive neural retina
  • ZFS:0000029Pharyngula:Prim-5
1.31e4
  • 1.31e4
56.24
  • 56.24
AEIR
  • AEIR
UBERON:0000004nose
  • ZFS:0000031Pharyngula:Prim-25
1.32e4
  • 1.32e4
55.86
  • 55.86
AEIR
  • AEIR
UBERON:0003050olfactory placode
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
1.34e4
  • 1.34e4
  • 1.41e4
54.97
  • 54.97
  • 52.75
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
1.37e4
  • 1.37e4
  • 1.75e4
54.08
  • 54.08
  • 41.42
AEIR
  • AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000022Gastrula:Bud
1.39e4
  • 1.39e4
53.31
  • 53.31
AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000031Pharyngula:Prim-25
1.41e4
  • 1.41e4
52.92
  • 52.92
AEIR
  • AEIR
UBERON:0001944pretectal region
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species18 genesCompare expression
Bilateria24 species24 genesCompare expression

Orthology information comes from OMA : ENSDARG00000017107.

Cross-references

EnsemblENSDARG00000017107 (nr2e1)
ZFINZDB-GENE-040801-127 (nr2e1)
EMBLBC077146, CU138515, EF010862
Uniprot/SPTREMBLQ6DEH0, Q6DEH0_DANRE

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