Gene: KCNA1 (1 to many) - ENSDARG00000017108 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000017108
Name	KCNA1 (1 to many)
Description	potassium channel, voltage gated shaker related subfamily A, member 1 [Source:HGNC Symbol;Acc:HGNC:6218]
Organism	Danio rerio (zebrafish)
Synonym(s)	aemk, huk1, kv1.1, mbk1, rbk1
Orthologs(s)	19 orthologs
Paralog(s)	10 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000966	retina	[+] 1 stage ZFS:0000037Larval:Day 5	5.02e3 5.02e3	83.19 83.19	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	1.31e4 1.31e4	56.25 56.25	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	1.41e4 1.41e4	52.85 52.85	AEIR AEIR
UBERON:0000033	head	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000066fully formed stage	1.75e4 1.75e4 1.96e4	41.43 41.43 34.26	AEIR AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	1.95e4 1.95e4	34.68 34.68	AEIR AEIR
UBERON:0000922	embryo	[+] 2 stages ZFS:0000033Hatching:Long-pec ZFS:0000037Larval:Day 5	2.01e4 2.01e4 2.05e4	32.63 32.63 31.44	AEIR AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	2.13e4 2.13e4	28.71 28.71	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	2.20e4 2.20e4	26.21 26.21	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	18 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Monodelphis domestica (opossum) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	18 genes ENSG00000111262 KCNA1 ENSMUSG00000047976 Kcna1 ENSPTRG00000004561 KCNA1 ENSGGOG00000027559 KCNA1 ENSMMUG00000012274 KCNA1 ENSRNOG00000019750 Kcna1 ENSBTAG00000016646 KCNA1 ENSSSCG00000000716 KCNA1 ENSECAG00000002999 KCNA1 ENSOCUG00000004459 KCNA1 ENSCAFG00000015289 KCNA1 ENSFCAG00000005956 KCNA1 ENSCPOG00000004477 KCNA1 ENSMODG00000024850 KCNA1 ENSOANG00000008085 KCNA1 ENSGALG00000017280 KCNA1 ENSACAG00000015431 KCNA1 ENSXETG00000008490 kcna1	Compare expression	[+]
Bilateria	19 species Homo sapiens (human) Mus musculus (mouse) Caenorhabditis elegans (nematode) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Monodelphis domestica (opossum) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	19 genes ENSG00000111262 KCNA1 ENSMUSG00000047976 Kcna1 WBGene00014261 shk-1 ENSPTRG00000004561 KCNA1 ENSGGOG00000027559 KCNA1 ENSMMUG00000012274 KCNA1 ENSRNOG00000019750 Kcna1 ENSBTAG00000016646 KCNA1 ENSSSCG00000000716 KCNA1 ENSECAG00000002999 KCNA1 ENSOCUG00000004459 KCNA1 ENSCAFG00000015289 KCNA1 ENSFCAG00000005956 KCNA1 ENSCPOG00000004477 KCNA1 ENSMODG00000024850 KCNA1 ENSOANG00000008085 KCNA1 ENSGALG00000017280 KCNA1 ENSACAG00000015431 KCNA1 ENSXETG00000008490 kcna1	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000017108.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Chordata	5 genes ENSDARG00000002241 KCNA2 (1 to many) ENSDARG00000046014 kcna6a ENSDARG00000062942 kcna1a ENSDARG00000079491 KCNA3 ENSDARG00000102064 kcna2b	Compare expression	[+]
Eumetazoa	10 genes ENSDARG00000002241 KCNA2 (1 to many) ENSDARG00000032799 kcnd2 ENSDARG00000046014 kcna6a ENSDARG00000056101 kcnd3 ENSDARG00000056502 si:ch73-334d15.4 ENSDARG00000062942 kcna1a ENSDARG00000074746 kcnd1 ENSDARG00000079491 KCNA3 ENSDARG00000102064 kcna2b ENSDARG00000102982 CABZ01113981.1	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000017108.

Cross-references

Ensembl	ENSDARG00000017108 (KCNA1 (1 to many))
HGNC	HGNC:6218 (KCNA1 (1 to many))
EMBL	CABZ01117779
Uniprot/SPTREMBL	E7FEJ3, E7FEJ3_DANRE