D. rerio Gene: slc3a1 - ENSDARG00000017165 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000017165
Nameslc3a1
Descriptionsolute carrier family 3 (amino acid transporter heavy chain), member 1 [Source:ZFIN;Acc:ZDB-GENE-090313-225]
OrganismDanio rerio (zebrafish)
Synonym(s)si:dkey-202m23.2
Orthologs(s)18 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
860
  • 860
97.12
  • 97.12
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.21e3
  • 2.21e3
92.59
  • 92.59
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.85e3
  • 3.85e3
87.10
  • 87.10
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.08e3
  • 7.08e3
76.29
  • 76.29
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
7.71e3
  • 7.71e3
74.18
  • 74.18
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
61.94
  • 61.94
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.22e4
  • 1.22e4
  • 1.64e4
59.23
  • 59.23
  • 45.01
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
57.99
  • 57.99
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
57.30
  • 57.30
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
55.92
  • 55.92
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.37e4
  • 1.37e4
54.29
  • 54.29
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
1.39e4
  • 1.39e4
  • 1.41e4
  • 1.59e4
  • 1.65e4
  • 2.00e4
53.36
  • 53.36
  • 52.81
  • 46.81
  • 44.59
  • 32.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
51.16
  • 51.16
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
1.63e4
  • 1.63e4
  • 1.66e4
45.37
  • 45.37
  • 44.41
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.68e4
  • 1.68e4
43.78
  • 43.78
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.72e4
  • 1.72e4
  • 1.81e4
42.44
  • 42.44
  • 39.33
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.02e4
  • 2.02e4
32.33
  • 32.33
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Cross-references

EnsemblENSDARG00000017165 (slc3a1)
ZFINZDB-GENE-090313-225 (slc3a1)
Uniprot/SPTREMBLF1QEA9, F1QEA9_DANRE

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