D. rerio Gene: foxf2a - ENSDARG00000017195 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000017195
Namefoxf2a
Descriptionforkhead box F2a [Source:ZFIN;Acc:ZDB-GENE-110407-5]
OrganismDanio rerio (zebrafish)
Synonym(s)foxq1l
Orthologs(s)12 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.77e3
  • 5.77e3
80.67
  • 80.67
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
7.54e3
  • 7.54e3
  • 9.85e3
74.77
  • 74.77
  • 67.02
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
8.12e3
  • 8.12e3
72.81
  • 72.81
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
1.03e4
  • 1.03e4
  • 1.17e4
  • 1.23e4
  • 1.46e4
  • 1.73e4
65.56
  • 65.56
  • 60.87
  • 58.69
  • 50.98
  • 42.04
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
63.31
  • 63.31
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
60.74
  • 60.74
AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000029Pharyngula:Prim-5
1.30e4
  • 1.30e4
56.49
  • 56.49
AEIR
  • AEIR
UBERON:0005253head mesenchyme
  • ZFS:0000030Pharyngula:Prim-15
1.39e4
  • 1.39e4
53.31
  • 53.31
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
1.48e4
  • 1.48e4
50.32
  • 50.32
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.49e4
  • 1.49e4
49.96
  • 49.96
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
  • 1.82e4
45.97
  • 45.97
  • 39.09
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.67e4
  • 1.67e4
44.23
  • 44.23
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.83e4
  • 1.83e4
38.82
  • 38.82
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.47e4
  • 2.47e4
17.34
  • 17.34
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Cross-references

EnsemblENSDARG00000017195 (foxf2a)
ZFINZDB-GENE-110407-5 (foxf2a)
EMBLCU856140
Uniprot/SPTREMBLF1QHL6, F1QHL6_DANRE

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