D. rerio Gene: pabpc1a - ENSDARG00000017219 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000017219
Namepabpc1a
Descriptionpoly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
OrganismDanio rerio (zebrafish)
Synonym(s)pabpc1, wu:fb16a02, wu:fc31e01, wu:fi19b08, wu:fj12d09, wu:fj61f06, zgc:109879
Orthologs(s)8 orthologs
Paralog(s)439 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000021Gastrula:90%-epiboly
26.0
  • 26.0
  • 87.3
  • 103
  • 112
  • 152
  • 167
99.92
  • 99.92
  • 99.71
  • 99.66
  • 99.63
  • 99.49
  • 99.45
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
51.5
  • 51.5
  • 57.0
  • 172
  • 580
  • 663
99.83
  • 99.83
  • 99.81
  • 99.43
  • 98.06
  • 97.78
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
63.5
  • 63.5
99.79
  • 99.79
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000106zygote stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • ZFS:0000049segmentation
  • UBERON:0000068embryo stage
81.8
  • 81.8
  • 107
  • 121
  • 121
  • 121
  • 130
  • 132
  • 224
  • 241
  • 252
  • 273
  • 276
  • 282
  • 328
  • 3.91e3
  • 4.40e3
  • 9.81e3
  • 1.43e4
99.73
  • 99.73
  • 99.65
  • 99.60
  • 99.60
  • 99.60
  • 99.57
  • 99.56
  • 99.25
  • 99.20
  • 99.16
  • 99.09
  • 99.08
  • 99.06
  • 98.90
  • 86.91
  • 85.27
  • 67.16
  • 52.23
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
106
  • 106
99.65
  • 99.65
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
108
  • 108
99.64
  • 99.64
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
121
  • 121
  • 154
  • 155
  • 181
  • 196
  • 203
  • 212
  • 216
  • 290
  • 373
99.60
  • 99.60
  • 99.49
  • 99.48
  • 99.40
  • 99.35
  • 99.32
  • 99.29
  • 99.28
  • 99.03
  • 98.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
126
  • 126
99.58
  • 99.58
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
129
  • 129
99.57
  • 99.57
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
135
  • 135
99.55
  • 99.55
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
140
  • 140
99.53
  • 99.53
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
147
  • 147
  • 228
99.51
  • 99.51
  • 99.24
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
165
  • 165
99.45
  • 99.45
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
166
  • 166
99.45
  • 99.45
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
171
  • 171
99.43
  • 99.43
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
178
  • 178
  • 236
99.41
  • 99.41
  • 99.21
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
196
  • 196
99.35
  • 99.35
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
196
  • 196
  • 437
  • 8.62e3
99.35
  • 99.35
  • 98.54
  • 71.14
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
205
  • 205
  • 283
  • 330
99.32
  • 99.32
  • 99.06
  • 98.90
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
207
  • 207
99.31
  • 99.31
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
211
  • 211
99.30
  • 99.30
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
237
  • 237
99.21
  • 99.21
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
248
  • 248
99.17
  • 99.17
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
280
  • 280
  • 9.34e3
99.07
  • 99.07
  • 68.74
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
298
  • 298
  • 344
  • 439
  • 651
99.00
  • 99.00
  • 98.85
  • 98.53
  • 97.82
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
306
  • 306
98.98
  • 98.98
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
316
  • 316
98.95
  • 98.95
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
321
  • 321
98.93
  • 98.93
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
330
  • 330
98.90
  • 98.90
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000104life cycle
366
  • 366
  • 938
  • 8.96e3
  • 9.51e3
  • 1.19e4
  • 1.22e4
  • 1.41e4
98.78
  • 98.78
  • 96.86
  • 69.99
  • 68.17
  • 60.00
  • 59.08
  • 52.72
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
559
  • 559
98.13
  • 98.13
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
928
  • 928
96.90
  • 96.90
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.57e3
  • 1.57e3
94.75
  • 94.75
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000016Blastula:30%-epiboly
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000106zygote stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000015Blastula:Dome
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000014Blastula:Sphere
  • UBERON:0000104life cycle
4.60e3
  • 4.60e3
  • 4.98e3
  • 6.40e3
  • 6.40e3
  • 6.40e3
  • 7.03e3
  • 7.03e3
  • 7.12e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.97e3
  • 7.97e3
  • 8.22e3
  • 8.53e3
  • 8.71e3
  • 8.96e3
  • 9.96e3
  • 1.49e4
84.61
  • 84.61
  • 83.33
  • 78.57
  • 78.57
  • 78.57
  • 76.46
  • 76.46
  • 76.18
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 74.99
  • 74.99
  • 74.99
  • 74.99
  • 73.32
  • 73.32
  • 72.48
  • 71.43
  • 70.82
  • 69.99
  • 66.66
  • 49.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001007digestive system
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
7.47e3
  • 7.47e3
  • 9.96e3
  • 9.96e3
75.00
  • 75.00
  • 66.67
  • 66.67
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001555digestive tract
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
8.53e3
  • 8.53e3
  • 9.33e3
  • 1.12e4
  • 1.50e4
71.43
  • 71.43
  • 68.74
  • 62.48
  • 49.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000035Larval:Protruding-mouth
8.66e3
  • 8.66e3
  • 1.10e4
  • 1.12e4
  • 1.38e4
71.02
  • 71.02
  • 63.32
  • 62.49
  • 53.85
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
1.03e4
  • 1.03e4
  • 1.07e4
65.61
  • 65.61
  • 64.27
AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • ZFS:0000035Larval:Protruding-mouth
1.07e4
  • 1.07e4
64.28
  • 64.28
AEIR
  • AEIR
UBERON:0005886post-hyoid pharyngeal arch skeleton
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
1.07e4
  • 1.07e4
  • 1.23e4
  • 1.26e4
  • 1.28e4
  • 1.28e4
64.28
  • 64.28
  • 58.80
  • 57.87
  • 57.14
  • 57.12
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
1.07e4
  • 1.07e4
  • 1.18e4
  • 1.20e4
64.27
  • 64.27
  • 60.50
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000164ventral mesenchyme
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
1.12e4
  • 1.12e4
  • 1.17e4
62.49
  • 62.49
  • 60.70
AEIR
  • AEIR
  • AEIR
UBERON:0005419pectoral appendage bud
  • ZFS:0000029Pharyngula:Prim-5
1.14e4
  • 1.14e4
61.88
  • 61.88
AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
1.15e4
  • 1.15e4
  • 1.20e4
61.34
  • 61.34
  • 59.98
AEIR
  • AEIR
  • AEIR
UBERON:0001997olfactory epithelium
  • UBERON:0000104life cycle
1.36e4
  • 1.36e4
54.59
  • 54.59
AEIR
  • AEIR
UBERON:0000949endocrine system
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Orthology information comes from OMA : ENSDARG00000017219.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Neopterygii1 geneCompare expression
Chordata3 genesCompare expression
Eukaryota439 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000017219.

Cross-references

EnsemblENSDARG00000017219 (pabpc1a)
ZFINZDB-GENE-030131-3238 (pabpc1a)
EMBLCU855877
Uniprot/SPTREMBLF1QB54, F1QB54_DANRE

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