D. rerio Gene: traf5 - ENSDARG00000017240 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000017240
Nametraf5
DescriptionTnf receptor-associated factor 5 [Source:ZFIN;Acc:ZDB-GENE-071120-3]
OrganismDanio rerio (zebrafish)
Synonym(s)si:ch211-284e20.7
Orthologs(s)18 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000066fully formed stage
7.76e3
  • 7.76e3
74.01
  • 74.01
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
7.78e3
  • 7.78e3
73.97
  • 73.97
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.55
  • 60.55
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
59.29
  • 59.29
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.27e4
  • 1.27e4
57.38
  • 57.38
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.39
  • 48.39
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.54e4
  • 1.54e4
  • 1.65e4
48.31
  • 48.31
  • 44.62
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
46.13
  • 46.13
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
45.34
  • 45.34
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.68e4
  • 1.68e4
43.68
  • 43.68
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
43.11
  • 43.11
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
42.93
  • 42.93
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.73e4
  • 1.73e4
  • 2.22e4
42.11
  • 42.11
  • 25.52
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.77e4
  • 1.77e4
40.87
  • 40.87
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.84
  • 40.84
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.89e4
  • 1.89e4
36.83
  • 36.83
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
1.96e4
  • 1.96e4
  • 2.02e4
  • 2.10e4
  • 2.18e4
34.38
  • 34.38
  • 32.39
  • 29.55
  • 26.85
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
2.00e4
  • 2.00e4
  • 2.06e4
32.99
  • 32.99
  • 30.98
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.06e4
  • 2.06e4
31.06
  • 31.06
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.23e4
  • 2.23e4
25.28
  • 25.28
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Cross-references

EnsemblENSDARG00000017240 (traf5)
ZFINZDB-GENE-071120-3 (traf5)
EMBLAL954145, CABZ01066660
Uniprot/SPTREMBLF1QV00, F1QV00_DANRE, F6NY94, F6NY94_DANRE

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