D. rerio Gene: tmed1b - ENSDARG00000017255 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000017255
Nametmed1b
Descriptiontransmembrane p24 trafficking protein 1b [Source:ZFIN;Acc:ZDB-GENE-070112-1112]
OrganismDanio rerio (zebrafish)
Synonym(s)p24 gamma 1b, zgc:158680
Orthologs(s)30 orthologs
Paralog(s)5 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.64e3
  • 1.64e3
94.51
  • 94.51
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.23e3
  • 3.23e3
89.19
  • 89.19
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
3.97e3
  • 3.97e3
  • 4.89e3
  • 6.70e3
  • 1.08e4
  • 1.31e4
86.70
  • 86.70
  • 83.61
  • 77.58
  • 63.79
  • 56.19
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
4.09e3
  • 4.09e3
86.32
  • 86.32
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
4.10e3
  • 4.10e3
  • 6.05e3
86.26
  • 86.26
  • 79.74
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
4.46e3
  • 4.46e3
  • 1.07e4
85.07
  • 85.07
  • 64.20
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.53e3
  • 4.53e3
84.82
  • 84.82
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
4.54e3
  • 4.54e3
  • 4.76e3
84.80
  • 84.80
  • 84.08
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
4.81e3
  • 4.81e3
83.89
  • 83.89
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
5.02e3
  • 5.02e3
83.18
  • 83.18
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.53e3
  • 5.53e3
81.48
  • 81.48
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.63e3
  • 5.63e3
81.17
  • 81.17
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
5.67e3
  • 5.67e3
81.00
  • 81.00
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
5.70e3
  • 5.70e3
80.92
  • 80.92
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
6.59e3
  • 6.59e3
  • 7.33e3
77.95
  • 77.95
  • 75.47
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
7.24e3
  • 7.24e3
75.76
  • 75.76
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
7.49e3
  • 7.49e3
74.94
  • 74.94
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.50e3
  • 7.50e3
74.91
  • 74.91
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
8.13e3
  • 8.13e3
72.78
  • 72.78
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.30
  • 64.30
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000049segmentation
  • UBERON:0000104life cycle
1.14e4
  • 1.14e4
  • 1.49e4
  • 1.50e4
61.70
  • 61.70
  • 49.95
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
  • 1.32e4
59.22
  • 59.22
  • 55.72
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.54
  • 54.54
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.87
  • 50.87
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.79e4
  • 1.79e4
40.18
  • 40.18
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi17 species17 genesCompare expression
Bilateria24 species30 genesCompare expression

Orthology information comes from OMA : ENSDARG00000017255.

Paralogs (same species)

Paralogy information comes from OMA : ENSDARG00000017255.

Cross-references

EnsemblENSDARG00000017255 (tmed1b)
ZFINZDB-GENE-070112-1112 (tmed1b)
EMBLCABZ01081722
Uniprot/SPTREMBLF1QF76, F1QF76_DANRE

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