D. rerio Gene: cdkl1 - ENSDARG00000017329 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000017329
Namecdkl1
Descriptioncyclin-dependent kinase-like 1 (CDC2-related kinase) [Source:ZFIN;Acc:ZDB-GENE-040808-34]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:101002
Orthologs(s)22 orthologs
Paralog(s)439 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.01e3
  • 1.01e3
96.62
  • 96.62
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000031Pharyngula:Prim-25
4.52e3
  • 4.52e3
  • 7.21e3
  • 7.35e3
  • 1.02e4
  • 1.22e4
  • 1.29e4
  • 1.32e4
  • 1.41e4
  • 1.78e4
84.88
  • 84.88
  • 75.85
  • 75.39
  • 65.98
  • 59.03
  • 56.69
  • 55.77
  • 52.81
  • 40.54
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
4.78e3
  • 4.78e3
84.00
  • 84.00
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
7.91e3
  • 7.91e3
  • 1.33e4
  • 1.41e4
  • 1.41e4
  • 1.44e4
  • 1.44e4
  • 1.45e4
  • 1.50e4
  • 1.50e4
  • 1.55e4
  • 1.57e4
73.52
  • 73.52
  • 55.53
  • 52.79
  • 52.78
  • 51.93
  • 51.85
  • 51.55
  • 49.80
  • 49.77
  • 48.11
  • 47.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2001257medial floor plate
  • ZFS:0000031Pharyngula:Prim-25
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
9.97e3
  • 9.97e3
66.63
  • 66.63
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
1.05e4
  • 1.05e4
  • 1.23e4
  • 1.75e4
65.00
  • 65.00
  • 58.69
  • 41.42
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
64.50
  • 64.50
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.04
  • 64.04
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.08e4
  • 1.08e4
  • 1.31e4
  • 1.63e4
63.70
  • 63.70
  • 56.22
  • 45.34
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
60.21
  • 60.21
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.27
  • 58.27
AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
1.28e4
  • 1.28e4
57.11
  • 57.11
AEIR
  • AEIR
UBERON:0003079floor plate
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000028Segmentation:26+ somites
1.29e4
  • 1.29e4
  • 1.31e4
  • 1.37e4
  • 1.49e4
  • 1.49e4
56.65
  • 56.65
  • 56.23
  • 54.15
  • 49.99
  • 49.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
1.31e4
  • 1.31e4
  • 1.34e4
56.23
  • 56.23
  • 54.97
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.33e4
  • 1.33e4
55.30
  • 55.30
AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000029Pharyngula:Prim-5
1.38e4
  • 1.38e4
53.83
  • 53.83
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.42e4
  • 1.42e4
  • 1.98e4
52.58
  • 52.58
  • 33.77
AEIR
  • AEIR
  • AEIR
UBERON:2007028spinal cord neural keel
  • ZFS:0000024Segmentation:5-9 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2007042spinal cord neural tube
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
UBERON:2001256lateral floor plate
  • ZFS:0000031Pharyngula:Prim-25
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0003058hypochord
  • ZFS:0000031Pharyngula:Prim-25
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
  • 1.61e4
49.72
  • 49.72
  • 45.99
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
1.52e4
  • 1.52e4
  • 1.76e4
49.23
  • 49.23
  • 41.05
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.52e4
  • 1.52e4
48.95
  • 48.95
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.66e4
  • 1.66e4
44.44
  • 44.44
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.71e4
  • 1.71e4
42.84
  • 42.84
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.77
  • 40.77
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.87e4
  • 1.87e4
37.53
  • 37.53
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.91e4
  • 1.91e4
36.02
  • 36.02
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.92e4
  • 1.92e4
35.78
  • 35.78
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
2.06e4
  • 2.06e4
30.95
  • 30.95
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi16 species16 genesCompare expression
Bilateria22 species22 genesCompare expression

Orthology information comes from OMA : ENSDARG00000017329.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eukaryota439 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000017329.

Cross-references

EnsemblENSDARG00000017329 (cdkl1)
ZFINZDB-GENE-040808-34 (cdkl1)
EMBLBX936452
Uniprot/SPTREMBLB8A6G8, B8A6G8_DANRE

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