Gene: slc44a5a - ENSDARG00000017398 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000017398
Name	slc44a5a
Description	solute carrier family 44, member 5a [Source:ZFIN;Acc:ZDB-GENE-070705-333]
Organism	Danio rerio (zebrafish)
Synonym(s)	ctl5a, si:dkey-189n19.2, slc44a5
Orthologs(s)	24 orthologs
Paralog(s)	6 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000966	retina	[+] 1 stage ZFS:0000037Larval:Day 5	6.26e3 6.26e3	79.04 79.04	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	1.37e4 1.37e4	54.21 54.21	AEIR AEIR
UBERON:0000307	blastula	[+] 2 stages ZFS:0000011Blastula:1k-cell ZFS:0000015Blastula:Dome	1.49e4 1.49e4 1.81e4	50.16 50.16 39.56	AEIR AEIR AEIR
UBERON:0000992	female gonad	[+] 1 stage UBERON:0000066fully formed stage	1.60e4 1.60e4	46.32 46.32	AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	1.70e4 1.70e4	43.12 43.12	AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	1.70e4 1.70e4	43.01 43.01	AEIR AEIR
UBERON:0000033	head	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000066fully formed stage	1.72e4 1.72e4 1.77e4	42.43 42.43 40.84	AEIR AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	1.88e4 1.88e4	37.07 37.07	AEIR AEIR
UBERON:0000922	embryo	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000068embryo stage	1.92e4 1.92e4 2.42e4	35.72 35.72 19.10	AEIR AEIR AEIR
UBERON:0004734	gastrula	[+] 1 stage ZFS:0000019Gastrula:Shield	1.95e4 1.95e4	34.74 34.74	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	2.00e4 2.00e4	33.09 33.09	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	2.12e4 2.12e4	29.12 29.12	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000069larval stage	2.15e4 2.15e4 2.49e4	28.12 28.12 16.78	AEIR AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	2.49e4 2.49e4	16.62 16.62	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	17 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Monodelphis domestica (opossum) Gallus gallus (chicken) Xenopus tropicalis (western clawed frog)	17 genes ENSG00000137968 SLC44A5 ENSMUSG00000028360 Slc44a5 ENSPTRG00000000869 SLC44A5 ENSGGOG00000007029 SLC44A5 ENSMMUG00000017907 SLC44A5 ENSRNOG00000042332 Slc44a5 ENSBTAG00000001326 SLC44A5 ENSSSCG00000003777 SLC44A5 ENSECAG00000022156 SLC44A5 ENSOCUG00000005562 SLC44A5 ENSCAFG00000020400 SLC44A5 ENSFCAG00000003245 SLC44A5 ENSCPOG00000000895 SLC44A5 ENSEEUG00000003566 SLC44A5 ENSMODG00000019086 SLC44A5 ENSGALG00000011379 SLC44A5 ENSXETG00000002987 slc44a5	Compare expression	[+]
Bilateria	24 species Homo sapiens (human) Mus musculus (mouse) Drosophila melanogaster (fruit fly) Caenorhabditis elegans (nematode) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Monodelphis domestica (opossum) Gallus gallus (chicken) Xenopus tropicalis (western clawed frog) Drosophila ananassae Drosophila mojavensis Drosophila simulans Drosophila virilis Drosophila yakuba	24 genes ENSG00000137968 SLC44A5 ENSMUSG00000028360 Slc44a5 FBgn0039637 CG11880 WBGene00018037 chtl-1 ENSPTRG00000000869 SLC44A5 ENSGGOG00000007029 SLC44A5 ENSMMUG00000017907 SLC44A5 ENSRNOG00000042332 Slc44a5 ENSBTAG00000001326 SLC44A5 ENSSSCG00000003777 SLC44A5 ENSECAG00000022156 SLC44A5 ENSOCUG00000005562 SLC44A5 ENSCAFG00000020400 SLC44A5 ENSFCAG00000003245 SLC44A5 ENSCPOG00000000895 SLC44A5 ENSEEUG00000003566 SLC44A5 ENSMODG00000019086 SLC44A5 ENSGALG00000011379 SLC44A5 ENSXETG00000002987 slc44a5 FBgn0100283 GF23289 FBgn0145001 GI22273 FBgn0192851 GD21415 FBgn0211151 GJ24066 FBgn0240989 GE23835	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000017398.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Neopterygii	1 gene ENSDARG00000057419 slc44a5b	Compare expression	[+]
Bilateria	3 genes ENSDARG00000037059 slc44a2 ENSDARG00000057419 slc44a5b ENSDARG00000103399 SLC44A2 (1 to many)	Compare expression	[+]
Opisthokonta	5 genes ENSDARG00000015946 slc44a1a ENSDARG00000037059 slc44a2 ENSDARG00000057419 slc44a5b ENSDARG00000090982 slc44a1b ENSDARG00000103399 SLC44A2 (1 to many)	Compare expression	[+]
Eukaryota	6 genes ENSDARG00000015946 slc44a1a ENSDARG00000037059 slc44a2 ENSDARG00000057419 slc44a5b ENSDARG00000090982 slc44a1b ENSDARG00000102381 SLC44A4 ENSDARG00000103399 SLC44A2 (1 to many)	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000017398.

Cross-references

Ensembl	ENSDARG00000017398 (slc44a5a)
ZFIN	ZDB-GENE-070705-333 (slc44a5a)
EMBL	BX901918, CR855319
Uniprot/SPTREMBL	F1R5E0, F1R5E0_DANRE