D. rerio Gene: phf20l1 - ENSDARG00000017427 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000017427
Namephf20l1
DescriptionPHD finger protein 20-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-5837]
OrganismDanio rerio (zebrafish)
Synonym(s)fi20g04, si:dkey-97i18.2, wu:fi20g04
Orthologs(s)10 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
4.29e3
  • 4.29e3
  • 7.34e3
  • 1.19e4
  • 1.23e4
  • 1.26e4
  • 1.27e4
85.63
  • 85.63
  • 75.44
  • 60.00
  • 58.67
  • 57.76
  • 57.60
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
4.76e3
  • 4.76e3
  • 5.42e3
  • 1.16e4
  • 1.18e4
  • 1.23e4
84.06
  • 84.06
  • 81.85
  • 61.02
  • 60.50
  • 58.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
5.23e3
  • 5.23e3
82.50
  • 82.50
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
5.44e3
  • 5.44e3
81.80
  • 81.80
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
5.49e3
  • 5.49e3
81.62
  • 81.62
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
6.09e3
  • 6.09e3
79.62
  • 79.62
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
6.15e3
  • 6.15e3
79.43
  • 79.43
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
6.42e3
  • 6.42e3
78.49
  • 78.49
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
6.46e3
  • 6.46e3
78.38
  • 78.38
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
6.70e3
  • 6.70e3
77.57
  • 77.57
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.94e3
  • 6.94e3
76.78
  • 76.78
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
7.43e3
  • 7.43e3
75.14
  • 75.14
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000106zygote stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
7.47e3
  • 7.47e3
  • 7.47e3
  • 7.91e3
  • 8.79e3
  • 1.01e4
  • 1.07e4
  • 1.13e4
  • 1.17e4
  • 1.31e4
  • 1.32e4
  • 1.36e4
  • 1.37e4
  • 1.39e4
  • 1.42e4
  • 1.52e4
  • 1.55e4
74.99
  • 74.99
  • 74.99
  • 73.52
  • 70.57
  • 66.08
  • 64.24
  • 62.18
  • 60.99
  • 56.11
  • 55.90
  • 54.35
  • 54.07
  • 53.57
  • 52.42
  • 49.08
  • 48.23
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
7.78e3
  • 7.78e3
  • 8.90e3
73.97
  • 73.97
  • 70.21
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
7.81e3
  • 7.81e3
73.85
  • 73.85
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
7.90e3
  • 7.90e3
  • 1.62e4
73.56
  • 73.56
  • 45.75
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
7.92e3
  • 7.92e3
  • 8.00e3
  • 8.63e3
  • 8.75e3
  • 1.12e4
  • 1.34e4
  • 1.44e4
  • 1.45e4
  • 1.56e4
73.47
  • 73.47
  • 73.20
  • 71.11
  • 70.69
  • 62.60
  • 55.11
  • 51.68
  • 51.33
  • 47.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
8.13e3
  • 8.13e3
72.80
  • 72.80
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
8.41e3
  • 8.41e3
71.84
  • 71.84
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
8.87e3
  • 8.87e3
70.31
  • 70.31
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
8.88e3
  • 8.88e3
70.27
  • 70.27
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
9.03e3
  • 9.03e3
  • 1.12e4
69.78
  • 69.78
  • 62.58
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
9.93e3
  • 9.93e3
66.75
  • 66.75
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.29
  • 64.29
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.58
  • 60.58
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.22e4
  • 1.22e4
  • 1.33e4
  • 1.66e4
59.02
  • 59.02
  • 55.47
  • 44.39
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.32e4
  • 1.32e4
55.95
  • 55.95
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Vertebrata2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000017427.

Cross-references

EnsemblENSDARG00000017427 (phf20l1)
ZFINZDB-GENE-030131-5837 (phf20l1)
EMBLCR855311
Uniprot/SPTREMBLE7F2Q3, E7F2Q3_DANRE, E7F8P3, E7F8P3_DANRE, E9QHS8, E9QHS8_DANRE

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