D. rerio Gene: zgc:123068 - ENSDARG00000017489 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000017489
Namezgc:123068
Descriptionzgc:123068 [Source:ZFIN;Acc:ZDB-GENE-051030-98]
OrganismDanio rerio (zebrafish)
Synonym(s)isg12-1
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
391
  • 391
98.69
  • 98.69
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
875
  • 875
97.07
  • 97.07
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
876
  • 876
97.07
  • 97.07
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
881
  • 881
97.05
  • 97.05
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.31e3
  • 1.31e3
95.62
  • 95.62
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
1.50e3
  • 1.50e3
94.99
  • 94.99
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
1.80e3
  • 1.80e3
93.97
  • 93.97
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.22e3
  • 2.22e3
92.58
  • 92.58
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
2.24e3
  • 2.24e3
  • 1.35e4
92.51
  • 92.51
  • 54.69
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.50e3
  • 2.50e3
91.63
  • 91.63
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
3.11e3
  • 3.11e3
89.58
  • 89.58
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
3.63e3
  • 3.63e3
  • 6.25e3
  • 6.60e3
  • 7.62e3
  • 7.67e3
  • 8.74e3
87.84
  • 87.84
  • 79.07
  • 77.90
  • 74.49
  • 74.33
  • 70.72
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
3.97e3
  • 3.97e3
86.70
  • 86.70
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
4.11e3
  • 4.11e3
86.26
  • 86.26
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
4.44e3
  • 4.44e3
85.13
  • 85.13
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
4.65e3
  • 4.65e3
84.43
  • 84.43
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000029Pharyngula:Prim-5
5.73e3
  • 5.73e3
  • 6.53e3
  • 6.95e3
  • 8.04e3
  • 8.06e3
  • 8.72e3
  • 8.97e3
  • 1.08e4
  • 1.46e4
  • 1.47e4
  • 1.56e4
80.81
  • 80.81
  • 78.15
  • 76.73
  • 73.09
  • 73.01
  • 70.79
  • 69.96
  • 63.98
  • 51.28
  • 50.69
  • 47.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
5.74e3
  • 5.74e3
  • 1.68e4
80.78
  • 80.78
  • 43.59
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
5.79e3
  • 5.79e3
80.62
  • 80.62
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
6.67e3
  • 6.67e3
  • 1.33e4
77.67
  • 77.67
  • 55.30
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
7.00e3
  • 7.00e3
76.58
  • 76.58
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
8.05e3
  • 8.05e3
  • 1.53e4
  • 1.60e4
73.04
  • 73.04
  • 48.72
  • 46.37
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
8.17e3
  • 8.17e3
  • 9.62e3
  • 1.28e4
  • 1.42e4
  • 1.74e4
  • 1.75e4
  • 1.93e4
72.64
  • 72.64
  • 67.79
  • 57.17
  • 52.50
  • 41.88
  • 41.31
  • 35.44
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
8.78e3
  • 8.78e3
70.60
  • 70.60
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
8.88e3
  • 8.88e3
  • 1.04e4
  • 1.31e4
70.27
  • 70.27
  • 65.30
  • 56.21
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.04e4
  • 1.04e4
65.22
  • 65.22
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.86e4
  • 1.86e4
37.73
  • 37.73
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi1 geneCompare expression
Clupeocephala3 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000017489.

Cross-references

EnsemblENSDARG00000017489 (zgc:123068)
ZFINZDB-GENE-051030-98 (zgc:123068)
EMBLBC107634, BN000219, BX005106
Uniprot/SPTREMBLQ6IEC9, Q6IEC9_DANRE

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