Gene: fgf1a - ENSDARG00000017542 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000017542
Name	fgf1a
Description	fibroblast growth factor 1a [Source:ZFIN;Acc:ZDB-GENE-040426-1729]
Organism	Danio rerio (zebrafish)
Synonym(s)	afgf, fgf1, hbgf-1, zgc:73249
Orthologs(s)	18 orthologs
Paralog(s)	2 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000955	brain	[+] 2 stages UBERON:0000066fully formed stage UBERON:0000104life cycle	4.84e3 4.84e3 1.49e4	83.81 83.81 49.94	AEIR AEIR AEIR
UBERON:0000468	multi-cellular organism	[+] 3 stages ZFS:0000023Segmentation:1-4 somites ZFS:0000024Segmentation:5-9 somites UBERON:0000104life cycle	6.64e3 6.64e3 7.03e3 1.47e4	77.77 77.77 76.46 50.90	AEIR AEIR AEIR AEIR
UBERON:0000966	retina	[+] 4 stages ZFS:0000033Hatching:Long-pec ZFS:0000032Pharyngula:High-pec ZFS:0000037Larval:Day 5 UBERON:0000066fully formed stage	1.02e4 1.02e4 1.05e4 1.21e4 1.46e4	65.89 65.89 64.98 59.35 51.07	AEIR AEIR AEIR AEIR AEIR
UBERON:0003081	lateral plate mesoderm	[+] 1 stage ZFS:0000026Segmentation:14-19 somites	1.31e4 1.31e4	56.24 56.24	AEIR AEIR
UBERON:0000948	heart	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000036Larval:Day 4	1.35e4 1.35e4 1.82e4	54.72 54.72 39.12	AEIR AEIR AEIR
UBERON:0002329	somite	[+] 2 stages ZFS:0000029Pharyngula:Prim-5 ZFS:0000026Segmentation:14-19 somites	1.37e4 1.37e4 1.39e4	54.13 54.13 53.41	AEIR AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	1.47e4 1.47e4	50.86 50.86	AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages ZFS:0000029Pharyngula:Prim-5 ZFS:0000037Larval:Day 5 UBERON:0004707pharyngula stage UBERON:0000068embryo stage ZFS:0000033Hatching:Long-pec	1.49e4 1.49e4 1.49e4 1.51e4 1.75e4 1.77e4	50.08 50.08 50.02 49.54 41.30 40.79	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0004749	blastodisc	[+] 1 stage ZFS:0000010Blastula:512-cell	1.49e4 1.49e4	50.00 50.00	AEIR AEIR
UBERON:0000925	endoderm	[+] 1 stage ZFS:0000026Segmentation:14-19 somites	1.49e4 1.49e4	49.99 49.99	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	1.55e4 1.55e4	47.98 47.98	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	1.56e4 1.56e4	47.70 47.70	AEIR AEIR
UBERON:0000307	blastula	[+] 1 stage ZFS:0000011Blastula:1k-cell	1.57e4 1.57e4	47.45 47.45	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	1.63e4 1.63e4	45.25 45.25	AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	1.79e4 1.79e4	39.93 39.93	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000069larval stage	1.81e4 1.81e4 1.90e4	39.48 39.48 36.35	AEIR AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	1.95e4 1.95e4	34.68 34.68	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	2.03e4 2.03e4	32.05 32.05	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

EST data: Bgee
In situ hybridization data: ZFIN
RNA-Seq data: Bgee

Sources of raw data:

EST data: UniGene
In situ hybridization data: ZFIN
RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	18 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	18 genes ENSG00000113578 FGF1 ENSMUSG00000036585 Fgf1 ENSPTRG00000017361 FGF1 ENSGGOG00000025578 FGF1 ENSMMUG00000023509 FGF1 ENSRNOG00000013867 Fgf1 ENSBTAG00000005198 FGF1 ENSSSCG00000024954 FGF1 ENSECAG00000020769 FGF1 ENSOCUG00000013987 FGF1 ENSCAFG00000031965 FGF1 ENSFCAG00000009122 FGF1 ENSCPOG00000004040 FGF1 ENSEEUG00000005863 FGF1 ENSOANG00000014242 FGF1 ENSGALG00000007343 FGF1 ENSACAG00000013427 FGF1 ENSXETG00000019566 fgf1	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000017542.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Neopterygii	1 gene ENSDARG00000042811 fgf1b	Compare expression	[+]
Vertebrata	2 genes ENSDARG00000042811 fgf1b ENSDARG00000104348 fgf2	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000017542.

Cross-references

Ensembl	ENSDARG00000017542 (fgf1a)
ZFIN	ZDB-GENE-040426-1729 (fgf1a)