D. rerio Gene: fgf1a - ENSDARG00000017542 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000017542
Namefgf1a
Descriptionfibroblast growth factor 1a [Source:ZFIN;Acc:ZDB-GENE-040426-1729]
OrganismDanio rerio (zebrafish)
Synonym(s)afgf, fgf1, hbgf-1, zgc:73249
Orthologs(s)18 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
4.84e3
  • 4.84e3
  • 1.49e4
83.81
  • 83.81
  • 49.94
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000104life cycle
6.64e3
  • 6.64e3
  • 7.03e3
  • 1.47e4
77.77
  • 77.77
  • 76.46
  • 50.90
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
  • 1.05e4
  • 1.21e4
  • 1.46e4
65.89
  • 65.89
  • 64.98
  • 59.35
  • 51.07
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003081lateral plate mesoderm
  • ZFS:0000026Segmentation:14-19 somites
1.31e4
  • 1.31e4
56.24
  • 56.24
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.35e4
  • 1.35e4
  • 1.82e4
54.72
  • 54.72
  • 39.12
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
1.37e4
  • 1.37e4
  • 1.39e4
54.13
  • 54.13
  • 53.41
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.86
  • 50.86
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.51e4
  • 1.75e4
  • 1.77e4
50.08
  • 50.08
  • 50.02
  • 49.54
  • 41.30
  • 40.79
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004749blastodisc
  • ZFS:0000010Blastula:512-cell
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000925endoderm
  • ZFS:0000026Segmentation:14-19 somites
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.55e4
  • 1.55e4
47.98
  • 47.98
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.56e4
  • 1.56e4
47.70
  • 47.70
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.57e4
  • 1.57e4
47.45
  • 47.45
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
45.25
  • 45.25
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.79e4
  • 1.79e4
39.93
  • 39.93
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.81e4
  • 1.81e4
  • 1.90e4
39.48
  • 39.48
  • 36.35
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.95e4
  • 1.95e4
34.68
  • 34.68
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.03e4
  • 2.03e4
32.05
  • 32.05
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Neopterygii1 geneCompare expression
Vertebrata2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000017542.

Cross-references

EnsemblENSDARG00000017542 (fgf1a)
ZFINZDB-GENE-040426-1729 (fgf1a)

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