D. rerio Gene: tlx3b - ENSDARG00000017615 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000017615
Nametlx3b
DescriptionT-cell leukemia, homeobox 3b [Source:ZFIN;Acc:ZDB-GENE-021021-1]
OrganismDanio rerio (zebrafish)
Synonym(s)tlx-3b, tlx3, ztlx-3b

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000247Rohon-Beard neuron
  • ZFS:0000024Segmentation:5-9 somites
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0003070trigeminal placode complex
  • ZFS:0000024Segmentation:5-9 somites
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
9.98e3
  • 9.98e3
66.57
  • 66.57
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
1.21e4
  • 1.21e4
  • 1.34e4
  • 1.39e4
  • 1.42e4
  • 1.43e4
  • 1.50e4
  • 1.50e4
  • 1.50e4
  • 1.75e4
59.49
  • 59.49
  • 54.98
  • 53.38
  • 52.34
  • 52.02
  • 49.94
  • 49.84
  • 49.61
  • 41.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.21e4
  • 1.21e4
59.43
  • 59.43
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.24e4
  • 1.24e4
  • 1.43e4
58.57
  • 58.57
  • 52.13
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
  • 2.23e4
56.28
  • 56.28
  • 25.29
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.36e4
  • 1.36e4
54.44
  • 54.44
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000036Larval:Day 4
1.41e4
  • 1.41e4
  • 1.46e4
  • 1.47e4
  • 1.47e4
  • 1.48e4
  • 1.51e4
  • 1.59e4
52.72
  • 52.72
  • 51.17
  • 50.85
  • 50.69
  • 50.54
  • 49.48
  • 46.93
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
1.47e4
  • 1.47e4
  • 1.50e4
  • 1.79e4
50.79
  • 50.79
  • 49.91
  • 40.01
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2001391anterior lateral line ganglion
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.55e4
  • 1.55e4
48.13
  • 48.13
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
47.17
  • 47.17
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.96e4
  • 1.96e4
34.47
  • 34.47
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.13e4
  • 2.13e4
28.67
  • 28.67
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EnsemblENSDARG00000017615 (tlx3b)
ZFINZDB-GENE-021021-1 (tlx3b)
EMBLBX005027
Uniprot/SPTREMBLF1QSY0, F1QSY0_DANRE

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