D. rerio Gene: mmp2 - ENSDARG00000017676 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000017676
Namemmp2
Descriptionmatrix metallopeptidase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-9123]
OrganismDanio rerio (zebrafish)
Synonym(s)gelatinase a, wu:fa99h12, wu:fk89d01
Orthologs(s)18 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
69.4
  • 69.4
99.77
  • 99.77
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
538
  • 538
98.20
  • 98.20
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
737
  • 737
  • 1.88e3
97.54
  • 97.54
  • 93.69
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
778
  • 778
  • 6.98e3
  • 1.12e4
  • 1.12e4
  • 1.12e4
97.40
  • 97.40
  • 76.63
  • 62.50
  • 62.50
  • 62.50
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
806
  • 806
97.30
  • 97.30
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
891
  • 891
97.02
  • 97.02
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
928
  • 928
96.90
  • 96.90
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.37e3
  • 1.37e3
95.41
  • 95.41
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.40e3
  • 1.40e3
95.32
  • 95.32
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.40e3
  • 1.40e3
  • 2.30e3
  • 2.63e3
95.32
  • 95.32
  • 92.30
  • 91.19
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
1.87e3
  • 1.87e3
  • 2.93e3
  • 1.03e4
93.73
  • 93.73
  • 90.18
  • 65.36
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0000066fully formed stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
1.99e3
  • 1.99e3
  • 3.05e3
  • 5.65e3
  • 5.65e3
  • 7.17e3
  • 7.60e3
  • 8.68e3
  • 8.71e3
  • 1.16e4
  • 1.21e4
  • 1.23e4
  • 1.37e4
  • 1.37e4
  • 1.38e4
  • 1.38e4
  • 1.44e4
  • 1.50e4
93.36
  • 93.36
  • 89.79
  • 81.08
  • 81.07
  • 76.01
  • 74.54
  • 70.95
  • 70.83
  • 61.10
  • 59.36
  • 58.98
  • 54.27
  • 54.26
  • 53.86
  • 53.76
  • 51.82
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
2.34e3
  • 2.34e3
  • 2.55e3
  • 2.76e3
  • 3.24e3
  • 3.69e3
  • 3.98e3
  • 5.54e3
  • 6.34e3
  • 6.96e3
  • 1.10e4
92.16
  • 92.16
  • 91.46
  • 90.76
  • 89.14
  • 87.64
  • 86.67
  • 81.46
  • 78.79
  • 76.71
  • 63.25
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.84e3
  • 2.84e3
90.49
  • 90.49
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
2.91e3
  • 2.91e3
90.25
  • 90.25
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
4.32e3
  • 4.32e3
85.55
  • 85.55
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000018Gastrula:Germ-ring
  • UBERON:0000106zygote stage
  • ZFS:0000037Larval:Day 5
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000022Gastrula:Bud
  • UBERON:0004707pharyngula stage
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000015Blastula:Dome
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
4.60e3
  • 4.60e3
  • 4.98e3
  • 4.98e3
  • 6.40e3
  • 6.40e3
  • 6.40e3
  • 6.64e3
  • 7.03e3
  • 7.12e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.97e3
  • 8.53e3
  • 8.71e3
  • 8.79e3
  • 8.96e3
  • 9.13e3
  • 9.71e3
  • 9.96e3
  • 9.96e3
  • 1.08e4
84.61
  • 84.61
  • 83.33
  • 83.33
  • 78.57
  • 78.57
  • 78.57
  • 77.77
  • 76.46
  • 76.18
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 74.99
  • 74.99
  • 74.99
  • 73.32
  • 71.43
  • 70.82
  • 70.57
  • 69.99
  • 69.43
  • 67.48
  • 66.66
  • 66.65
  • 63.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000030Pharyngula:Prim-15
4.81e3
  • 4.81e3
  • 5.22e3
  • 1.22e4
  • 1.34e4
  • 1.36e4
  • 1.49e4
83.90
  • 83.90
  • 82.51
  • 59.08
  • 54.99
  • 54.53
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
5.24e3
  • 5.24e3
82.45
  • 82.45
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
5.41e3
  • 5.41e3
81.90
  • 81.90
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
6.06e3
  • 6.06e3
79.71
  • 79.71
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
6.62e3
  • 6.62e3
77.85
  • 77.85
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
9.21e3
  • 9.21e3
69.16
  • 69.16
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
9.25e3
  • 9.25e3
69.03
  • 69.03
AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
9.60e3
  • 9.60e3
  • 9.60e3
  • 9.96e3
  • 1.36e4
  • 1.38e4
  • 1.40e4
67.85
  • 67.85
  • 67.85
  • 66.65
  • 54.53
  • 53.83
  • 53.10
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
9.79e3
  • 9.79e3
  • 9.98e3
67.21
  • 67.21
  • 66.57
AEIR
  • AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
9.96e3
  • 9.96e3
  • 1.03e4
  • 1.07e4
66.65
  • 66.65
  • 65.61
  • 64.26
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005253head mesenchyme
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
9.96e3
  • 9.96e3
  • 9.96e3
  • 9.96e3
  • 1.19e4
  • 1.19e4
  • 1.20e4
  • 1.28e4
66.65
  • 66.65
  • 66.65
  • 66.65
  • 59.99
  • 59.99
  • 59.98
  • 57.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.04e4
  • 1.04e4
  • 1.12e4
  • 1.14e4
  • 1.15e4
  • 1.15e4
  • 1.18e4
  • 1.20e4
65.19
  • 65.19
  • 62.48
  • 61.88
  • 61.63
  • 61.34
  • 60.50
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005515rhombomere 5
  • ZFS:0000025Segmentation:10-13 somites
1.07e4
  • 1.07e4
64.28
  • 64.28
AEIR
  • AEIR
UBERON:0001003skin epidermis
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.12e4
  • 1.12e4
  • 1.12e4
  • 1.14e4
62.48
  • 62.48
  • 62.48
  • 61.88
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
59.16
  • 59.16
AEIR
  • AEIR
UBERON:0005805dorsal aorta
  • ZFS:0000031Pharyngula:Prim-25
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
1.30e4
  • 1.30e4
  • 1.32e4
  • 1.37e4
  • 1.39e4
  • 1.55e4
56.49
  • 56.49
  • 55.85
  • 54.26
  • 53.31
  • 48.21
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001555digestive tract
  • ZFS:0000035Larval:Protruding-mouth
1.31e4
  • 1.31e4
56.24
  • 56.24
AEIR
  • AEIR
UBERON:0003072optic cup
  • ZFS:0000029Pharyngula:Prim-5
1.34e4
  • 1.34e4
54.99
  • 54.99
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
52.90
  • 52.90
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
1.42e4
  • 1.42e4
  • 1.60e4
  • 1.72e4
52.57
  • 52.57
  • 46.58
  • 42.33
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0002320connective tissue cell
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0014907intersomitic vessel
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0003069otic placode
  • ZFS:0000027Segmentation:20-25 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0010204tail vasculature
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000039median axial vein
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:2001089myoseptum
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001631thoracic duct
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0001846internal ear
  • ZFS:0000032Pharyngula:High-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.54e4
  • 1.54e4
48.44
  • 48.44
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
1.74e4
  • 1.74e4
41.75
  • 41.75
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Cross-references

EnsemblENSDARG00000017676 (mmp2)
ZFINZDB-GENE-030131-9123 (mmp2)
EMBLBC076545, BX663609
Uniprot/SPTREMBLQ6DG10, Q6DG10_DANRE

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