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D. rerio Gene: rdh1 - ENSDARG00000017882 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000017882
Namerdh1
Descriptionretinol dehydrogenase 1 [Source:ZFIN;Acc:ZDB-GENE-030912-15]
OrganismDanio rerio (zebrafish)
Synonym(s)rdhb
Paralog(s)37 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
965
  • 965
  • 9.34e3
  • 1.12e4
  • 1.21e4
96.77
  • 96.77
  • 68.74
  • 62.48
  • 59.50
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.18e3
  • 1.18e3
96.07
  • 96.07
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
4.75e3
  • 4.75e3
  • 1.18e4
  • 1.33e4
84.08
  • 84.08
  • 60.56
  • 55.36
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
5.45e3
  • 5.45e3
81.76
  • 81.76
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
5.75e3
  • 5.75e3
80.73
  • 80.73
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
5.77e3
  • 5.77e3
  • 1.62e4
  • 1.79e4
  • 1.84e4
  • 1.89e4
80.69
  • 80.69
  • 45.64
  • 40.01
  • 38.23
  • 36.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
7.91e3
  • 7.91e3
  • 1.12e4
  • 1.17e4
  • 1.52e4
  • 1.79e4
  • 1.81e4
73.51
  • 73.51
  • 62.36
  • 60.94
  • 49.03
  • 40.18
  • 39.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
8.53e3
  • 8.53e3
71.44
  • 71.44
AEIR
  • AEIR
UBERON:2001076intestinal bulb
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
8.96e3
  • 8.96e3
  • 1.09e4
  • 1.16e4
69.99
  • 69.99
  • 63.63
  • 61.10
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
59.16
  • 59.16
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000029Pharyngula:Prim-5
1.41e4
  • 1.41e4
52.75
  • 52.75
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.58e4
  • 1.58e4
  • 1.67e4
47.20
  • 47.20
  • 43.95
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
45.57
  • 45.57
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.77
  • 40.77
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.88e4
  • 1.88e4
  • 2.14e4
37.08
  • 37.08
  • 28.50
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.37e4
  • 2.37e4
20.64
  • 20.64
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Paralogs (same species)

Cross-references

EnsemblENSDARG00000017882 (rdh1)
ZFINZDB-GENE-030912-15 (rdh1)
EMBLBX927361
Uniprot/SPTREMBLF1QKH9, F1QKH9_DANRE

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