D. rerio Gene: pdss1 - ENSDARG00000017910 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000017910
Namepdss1
Descriptionprenyl (decaprenyl) diphosphate synthase, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4430]
OrganismDanio rerio (zebrafish)
Synonym(s)tprt, wu:fc11f12, wu:fd05d05, zgc:112058

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
3.82e3
  • 3.82e3
  • 1.44e4
87.10362
  • 87.10362
  • 51.36245
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
4.24e3
  • 4.24e3
  • 4.44e3
  • 6.13e3
  • 6.29e3
  • 6.45e3
  • 6.48e3
  • 6.55e3
  • 6.59e3
  • 8.10e3
  • 8.39e3
85.67843
  • 85.67843
  • 84.99316
  • 79.29005
  • 78.73510
  • 78.21638
  • 78.08649
  • 77.85237
  • 77.73985
  • 72.62239
  • 71.64538
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
4.31e3
  • 4.31e3
85.45282
  • 85.45282
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
4.53e3
  • 4.53e3
  • 1.23e4
84.69064
  • 84.69064
  • 58.58351
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
4.66e3
  • 4.66e3
  • 1.20e4
84.26261
  • 84.26261
  • 59.59010
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
4.67e3
  • 4.67e3
  • 5.07e3
  • 8.74e3
84.21740
  • 84.21740
  • 82.88060
  • 70.45010
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
4.76e3
  • 4.76e3
83.91111
  • 83.91111
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
5.07e3
  • 5.07e3
82.86499
  • 82.86499
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000106zygote stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000037Larval:Day 5
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
5.17e3
  • 5.17e3
  • 5.32e3
  • 5.36e3
  • 5.46e3
  • 5.67e3
  • 5.89e3
  • 6.14e3
  • 6.40e3
  • 6.64e3
  • 6.67e3
  • 6.93e3
  • 7.12e3
  • 8.62e3
  • 9.27e3
  • 1.04e4
  • 1.46e4
  • 1.48e4
82.51709
  • 82.51709
  • 82.03749
  • 81.89572
  • 81.55621
  • 80.84291
  • 80.08781
  • 79.25965
  • 78.35977
  • 77.57655
  • 77.47433
  • 76.57163
  • 75.95056
  • 70.88448
  • 68.66059
  • 64.68900
  • 50.60365
  • 49.91719
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.22e3
  • 5.22e3
82.36020
  • 82.36020
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
5.44e3
  • 5.44e3
81.63352
  • 81.63352
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
5.63e3
  • 5.63e3
  • 7.35e3
  • 9.70e3
80.97541
  • 80.97541
  • 75.14556
  • 67.20254
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
5.82e3
  • 5.82e3
  • 6.95e3
  • 7.12e3
  • 1.29e4
  • 1.33e4
80.33591
  • 80.33591
  • 76.50415
  • 75.94241
  • 56.49131
  • 54.97294
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
6.09e3
  • 6.09e3
79.43657
  • 79.43657
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
6.31e3
  • 6.31e3
78.66503
  • 78.66503
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.60e3
  • 6.60e3
77.68915
  • 77.68915
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
6.63e3
  • 6.63e3
  • 1.34e4
77.57898
  • 77.57898
  • 54.63134
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
6.64e3
  • 6.64e3
  • 1.27e4
  • 1.28e4
77.57195
  • 77.57195
  • 57.11581
  • 56.78945
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.85e3
  • 6.85e3
76.84079
  • 76.84079
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
6.97e3
  • 6.97e3
76.43858
  • 76.43858
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
7.21e3
  • 7.21e3
75.62402
  • 75.62402
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
7.23e3
  • 7.23e3
75.57525
  • 75.57525
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
7.29e3
  • 7.29e3
  • 9.75e3
75.35959
  • 75.35959
  • 67.04928
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
7.62e3
  • 7.62e3
  • 8.39e3
  • 1.03e4
  • 1.03e4
  • 1.11e4
74.23318
  • 74.23318
  • 71.62990
  • 65.32314
  • 65.19237
  • 62.32265
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
8.56e3
  • 8.56e3
  • 1.30e4
  • 1.34e4
71.08430
  • 71.08430
  • 56.22973
  • 54.73317
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
8.62e3
  • 8.62e3
70.85738
  • 70.85738
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
9.02e3
  • 9.02e3
  • 9.42e3
69.49998
  • 69.49998
  • 68.15153
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
9.68e3
  • 9.68e3
67.27219
  • 67.27219
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
9.73e3
  • 9.73e3
67.11000
  • 67.11000
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBC093175, CR385039
EnsemblENSDARG00000017910 (pdss1)
Uniprot/SPTREMBLQ567H1, Q567H1_DANRE
ZFINZDB-GENE-030131-4430 (pdss1)

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