D. rerio Gene: tbx2a - ENSDARG00000018025 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000018025
Nametbx2a
DescriptionT-box 2a [Source:ZFIN;Acc:ZDB-GENE-990917-4]
OrganismDanio rerio (zebrafish)
Synonym(s)tbx-a, tbx2l, tbxa, zgc:85705

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
3.73e3
  • 3.73e3
87.39540
  • 87.39540
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.21e3
  • 4.21e3
85.77730
  • 85.77730
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
4.70e3
  • 4.70e3
  • 1.40e4
84.12341
  • 84.12341
  • 52.77576
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
6.86e3
  • 6.86e3
  • 7.92e3
  • 8.11e3
  • 9.09e3
  • 1.07e4
  • 1.76e4
  • 1.77e4
  • 1.77e4
  • 1.80e4
76.82913
  • 76.82913
  • 73.24237
  • 72.59223
  • 69.29681
  • 63.98600
  • 40.40921
  • 40.27188
  • 40.13929
  • 39.14302
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002087atrioventricular canal
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000032Pharyngula:High-pec
9.87e3
  • 9.87e3
  • 1.06e4
  • 1.48e4
66.65990
  • 66.65990
  • 64.28063
  • 50.00169
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
9.87e3
  • 9.87e3
  • 1.22e4
  • 1.22e4
  • 1.22e4
66.65652
  • 66.65652
  • 58.80324
  • 58.80324
  • 58.80324
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005419pectoral appendage bud
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
9.87e3
  • 9.87e3
  • 1.23e4
  • 1.23e4
66.64638
  • 66.64638
  • 58.31136
  • 58.31136
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
1.02e4
  • 1.02e4
  • 1.06e4
  • 1.09e4
65.60979
  • 65.60979
  • 64.27218
  • 63.31813
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005569rhombomere 2
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
1.11e4
  • 1.11e4
  • 1.48e4
  • 1.48e4
62.49830
  • 62.49830
  • 49.99831
  • 49.99831
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
1.11e4
  • 1.11e4
  • 1.14e4
  • 1.16e4
  • 1.23e4
  • 1.27e4
62.47802
  • 62.47802
  • 61.33828
  • 60.84251
  • 58.29446
  • 57.11581
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
1.16e4
  • 1.16e4
  • 1.33e4
  • 1.42e4
  • 1.76e4
60.84251
  • 60.84251
  • 54.97294
  • 51.88368
  • 40.49179
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000027Segmentation:20-25 somites
1.16e4
  • 1.16e4
  • 1.16e4
  • 1.18e4
  • 1.18e4
  • 1.20e4
60.84251
  • 60.84251
  • 60.68048
  • 59.97634
  • 59.97634
  • 59.49845
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004117pharyngeal pouch
  • ZFS:0000033Hatching:Long-pec
1.18e4
  • 1.18e4
59.99662
  • 59.99662
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
1.18e4
  • 1.18e4
  • 1.23e4
  • 1.26e4
59.97634
  • 59.97634
  • 58.31136
  • 57.47466
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
1.21e4
  • 1.21e4
  • 1.37e4
59.07907
  • 59.07907
  • 53.55284
AEIR
  • AEIR
  • AEIR
UBERON:2000083ventral mesoderm
  • ZFS:0000026Segmentation:14-19 somites
1.22e4
  • 1.22e4
58.80324
  • 58.80324
AEIR
  • AEIR
UBERON:0006859swim bladder bud
  • ZFS:0000033Hatching:Long-pec
1.23e4
  • 1.23e4
58.32826
  • 58.32826
AEIR
  • AEIR
UBERON:0003069otic placode
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
1.25e4
  • 1.25e4
  • 1.36e4
  • 1.48e4
57.87109
  • 57.87109
  • 54.15145
  • 50.00169
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001555digestive tract
  • ZFS:0000029Pharyngula:Prim-5
1.28e4
  • 1.28e4
56.64807
  • 56.64807
AEIR
  • AEIR
UBERON:0002081cardiac atrium
  • ZFS:0000033Hatching:Long-pec
1.29e4
  • 1.29e4
56.24156
  • 56.24156
AEIR
  • AEIR
UBERON:0001846internal ear
  • ZFS:0000033Hatching:Long-pec
1.32e4
  • 1.32e4
55.54540
  • 55.54540
AEIR
  • AEIR
UBERON:0003050olfactory placode
  • ZFS:0000029Pharyngula:Prim-5
1.33e4
  • 1.33e4
54.97294
  • 54.97294
AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000025Segmentation:10-13 somites
1.33e4
  • 1.33e4
  • 1.48e4
54.97294
  • 54.97294
  • 49.99831
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • ZFS:0000033Hatching:Long-pec
1.34e4
  • 1.34e4
54.73317
  • 54.73317
AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
1.34e4
  • 1.34e4
  • 1.48e4
54.73317
  • 54.73317
  • 49.99831
AEIR
  • AEIR
  • AEIR
UBERON:0004141heart tube
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
1.40e4
  • 1.40e4
  • 1.41e4
52.75244
  • 52.75244
  • 52.47126
AEIR
  • AEIR
  • AEIR
UBERON:0002064common cardinal vein
  • ZFS:0000033Hatching:Long-pec
1.48e4
  • 1.48e4
50.00169
  • 50.00169
AEIR
  • AEIR
UBERON:0003110otic region
  • ZFS:0000025Segmentation:10-13 somites
1.48e4
  • 1.48e4
50.00169
  • 50.00169
AEIR
  • AEIR
UBERON:0012463cloacal lumen
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
1.48e4
  • 1.48e4
  • 1.48e4
50.00169
  • 50.00169
  • 50.00169
AEIR
  • AEIR
  • AEIR
ZFA:0001065lateral mesoderm (Danio)
  • ZFS:0000027Segmentation:20-25 somites
1.48e4
  • 1.48e4
49.99831
  • 49.99831
AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000025Segmentation:10-13 somites
1.48e4
  • 1.48e4
49.99662
  • 49.99662
AEIR
  • AEIR
UBERON:0003066pharyngeal arch 2
  • ZFS:0000029Pharyngula:Prim-5
1.48e4
  • 1.48e4
49.99662
  • 49.99662
AEIR
  • AEIR
UBERON:0004362pharyngeal arch 1
  • ZFS:0000029Pharyngula:Prim-5
1.48e4
  • 1.48e4
49.99662
  • 49.99662
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • ZFS:0000033Hatching:Long-pec
1.48e4
  • 1.48e4
49.98986
  • 49.98986
AEIR
  • AEIR
UBERON:0000931proctodeum
  • ZFS:0000029Pharyngula:Prim-5
1.48e4
  • 1.48e4
49.98648
  • 49.98648
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.56e4
  • 1.56e4
47.21579
  • 47.21579
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
44.73493
  • 44.73493
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
44.52337
  • 44.52337
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.65e4
  • 1.65e4
44.29892
  • 44.29892
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.74e4
  • 1.74e4
41.34506
  • 41.34506
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.74e4
  • 1.74e4
41.20291
  • 41.20291
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.76e4
  • 1.76e4
40.64162
  • 40.64162
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.76e4
  • 1.76e4
  • 1.77e4
  • 1.77e4
  • 1.77e4
  • 1.78e4
  • 1.80e4
  • 1.82e4
40.49306
  • 40.49306
  • 40.25570
  • 40.24941
  • 40.05343
  • 39.71987
  • 39.29189
  • 38.48958
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
1.83e4
  • 1.83e4
38.13050
  • 38.13050
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.91e4
  • 1.91e4
35.34179
  • 35.34179
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.97e4
  • 1.97e4
33.49332
  • 33.49332
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.21e4
  • 2.21e4
25.24293
  • 25.24293
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLAL935115
EnsemblENSDARG00000018025 (tbx2a)
Uniprot/SPTREMBLB0R122, B0R122_DANRE
ZFINZDB-GENE-990917-4 (tbx2a)

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