D. rerio Gene: zgc:171704 - ENSDARG00000018048 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000018048
Namezgc:171704
Descriptionzgc:171704 [Source:ZFIN;Acc:ZDB-GENE-070820-16]
OrganismDanio rerio (zebrafish)
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
163
  • 163
99.46
  • 99.46
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
1.36e3
  • 1.36e3
95.44
  • 95.44
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
7.49e3
  • 7.49e3
  • 1.12e4
74.92
  • 74.92
  • 62.42
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.47e3
  • 8.47e3
71.63
  • 71.63
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
8.83e3
  • 8.83e3
70.43
  • 70.43
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
8.92e3
  • 8.92e3
70.14
  • 70.14
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
9.60e3
  • 9.60e3
  • 1.62e4
67.85
  • 67.85
  • 45.91
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.36
  • 62.36
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.13e4
  • 1.13e4
  • 1.53e4
62.16
  • 62.16
  • 48.78
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.20e4
  • 1.20e4
59.69
  • 59.69
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
59.22
  • 59.22
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.95
  • 56.95
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
43.24
  • 43.24
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.71e4
  • 1.71e4
42.90
  • 42.90
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.71e4
  • 1.71e4
42.61
  • 42.61
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
1.80e4
  • 1.80e4
  • 1.86e4
  • 1.87e4
  • 2.31e4
39.62
  • 39.62
  • 37.67
  • 37.54
  • 22.79
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.87e4
  • 1.87e4
37.53
  • 37.53
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.91e4
  • 1.91e4
35.93
  • 35.93
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.95e4
  • 1.95e4
34.77
  • 34.77
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
2.08e4
  • 2.08e4
  • 2.22e4
30.47
  • 30.47
  • 25.67
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Neopterygii1 geneCompare expression
Deuterostomia2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000018048.

Cross-references

EnsemblENSDARG00000018048 (zgc:171704)
ZFINZDB-GENE-070820-16 (zgc:171704)
EMBLBC150380, CR388365
Uniprot/SPTREMBLA7E2J8, A7E2J8_DANRE, F1QWY4, F1QWY4_DANRE

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