Gene: ptchd1 - ENSDARG00000018066
- Danio rerio (zebrafish)
General information
| Ensembl ID | ENSDARG00000018066 |
|---|---|
| Name | ptchd1 |
| Description | patched domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-061220-1] |
| Organism | Danio rerio (zebrafish) |
| Orthologs(s) | 16 orthologs |
| Paralog(s) | 1 paralogs |
Expression
| Anat. entity ID | Anatomical entity | Developmental stage(s) | Rank score | Expression score | Sources |
|---|---|---|---|---|---|
| UBERON:0000955 | brain |
| 1.31e4
| 56.27
| AEIR
|
| UBERON:0000922 | embryo |
| 1.81e4
| 39.35
| AEIR
|
| UBERON:0000033 | head |
| 1.89e4
| 36.60
| AEIR
|
| UBERON:0002548 | larva |
| 2.15e4
| 28.02
| AEIR
|
| A | Affymetrix |
|---|---|
| E | EST |
| I | In Situ |
| R | RNA-Seq |
| data |
| no data |
| 3.25e4 | lightgrey: low confidence scores |
|---|---|
| important score variation |
Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.
Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.
Orthologs
| Taxon name | Species with orthologs | Gene(s) | Expression comparison | See details |
|---|---|---|---|---|
| Euteleostomi | 16 species
| 16 genes
| Compare expression |
Orthology information comes from OMA : ENSDARG00000018066.
Paralogs (same species)
| Taxon name | Gene(s) | Expression comparison | See details |
|---|---|---|---|
| Vertebrata | 1 gene
| Compare expression |
Paralogy information comes from OMA : ENSDARG00000018066.
Cross-references
| Ensembl | ENSDARG00000018066 (ptchd1) |
|---|---|
| ZFIN | ZDB-GENE-061220-1 (ptchd1) |
| EMBL | BX537285, FP103106 |
| Uniprot/SPTREMBL | K7DYL5, K7DYL5_DANRE |