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D. rerio Gene: rdh12 - ENSDARG00000018069 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000018069
Namerdh12
Descriptionretinol dehydrogenase 12 (all-trans/9-cis/11-cis) [Source:ZFIN;Acc:ZDB-GENE-040718-9]
OrganismDanio rerio (zebrafish)
Synonym(s)wu:fj43a10, zgc:92430
Orthologs(s)32 orthologs
Paralog(s)37 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.38e3
  • 1.38e3
95.40
  • 95.40
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.64e3
  • 1.64e3
94.50
  • 94.50
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.73e3
  • 2.73e3
90.85
  • 90.85
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
2.77e3
  • 2.77e3
  • 7.47e3
  • 8.96e3
  • 1.05e4
  • 1.05e4
  • 1.07e4
90.73
  • 90.73
  • 75.00
  • 70.00
  • 64.99
  • 64.99
  • 64.28
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
4.05e3
  • 4.05e3
  • 1.11e4
86.43
  • 86.43
  • 62.73
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000037Larval:Day 5
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
5.77e3
  • 5.77e3
  • 9.96e3
  • 1.30e4
  • 1.50e4
  • 1.50e4
80.67
  • 80.67
  • 66.65
  • 56.38
  • 49.92
  • 49.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001792ganglionic layer of retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
6.40e3
  • 6.40e3
  • 8.96e3
  • 1.12e4
78.57
  • 78.57
  • 69.99
  • 62.49
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
6.73e3
  • 6.73e3
  • 1.12e4
77.48
  • 77.48
  • 62.60
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
7.75e3
  • 7.75e3
  • 1.30e4
  • 1.33e4
  • 1.39e4
  • 1.42e4
74.05
  • 74.05
  • 56.62
  • 55.55
  • 53.43
  • 52.30
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
8.32e3
  • 8.32e3
72.15
  • 72.15
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
9.65e3
  • 9.65e3
67.68
  • 67.68
AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.02e4
  • 1.02e4
  • 1.06e4
  • 1.08e4
  • 1.26e4
  • 1.26e4
65.77
  • 65.77
  • 64.56
  • 63.87
  • 57.87
  • 57.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
1.03e4
  • 1.03e4
  • 1.08e4
65.67
  • 65.67
  • 63.93
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
1.03e4
  • 1.03e4
  • 1.24e4
65.43
  • 65.43
  • 58.40
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.07e4
  • 1.07e4
64.13
  • 64.13
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
  • 1.59e4
59.67
  • 59.67
  • 46.75
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.21e4
  • 1.21e4
59.45
  • 59.45
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
59.34
  • 59.34
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.36
  • 58.36
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.38e4
  • 1.38e4
53.69
  • 53.69
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
52.87
  • 52.87
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.45e4
  • 1.45e4
51.58
  • 51.58
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.87
  • 50.87
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.60
  • 48.60
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
46.18
  • 46.18
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.86e4
  • 1.86e4
37.65
  • 37.65
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression
Bilateria7 genesCompare expression
Opisthokonta16 genesCompare expression
Eukaryota37 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000018069.

Cross-references

EnsemblENSDARG00000018069 (rdh12)
ZFINZDB-GENE-040718-9 (rdh12)
EMBLBX470227
Uniprot/SPTREMBLB8A539, B8A539_DANRE

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