D. rerio Gene: casq1b - ENSDARG00000018105 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000018105
Namecasq1b
Descriptioncalsequestrin 1b [Source:ZFIN;Acc:ZDB-GENE-060929-1070]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:154027
Orthologs(s)1 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
294
  • 294
99.02
  • 99.02
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
407
  • 407
98.64
  • 98.64
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
687
  • 687
97.70
  • 97.70
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
917
  • 917
  • 1.26e3
  • 3.06e3
  • 5.30e3
  • 7.25e3
96.93
  • 96.93
  • 95.78
  • 89.77
  • 82.27
  • 75.71
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.41e3
  • 1.41e3
  • 1.46e3
95.28
  • 95.28
  • 95.11
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.66e3
  • 1.66e3
  • 6.57e3
94.46
  • 94.46
  • 78.01
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.70e3
  • 1.70e3
  • 1.36e4
94.31
  • 94.31
  • 54.50
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.05e3
  • 2.05e3
93.13
  • 93.13
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
5.03e3
  • 5.03e3
83.17
  • 83.17
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
5.19e3
  • 5.19e3
82.63
  • 82.63
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.30e4
  • 1.30e4
56.36
  • 56.36
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
1.78e4
  • 1.78e4
40.37
  • 40.37
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.14e4
  • 2.14e4
28.28
  • 28.28
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.31e4
  • 2.31e4
22.52
  • 22.52
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Bilateria1 species1 geneCompare expression

Orthology information comes from OMA : ENSDARG00000018105.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Bilateria2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000018105.

Cross-references

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