Gene: rab3da - ENSDARG00000018107 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000018107
Name	rab3da
Description	RAB3D, member RAS oncogene family, a [Source:ZFIN;Acc:ZDB-GENE-080722-14]
Organism	Danio rerio (zebrafish)
Synonym(s)	fi17a03, rab3d, wu:fi17a03

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000992	female gonad	[+] 1 stage UBERON:0000066fully formed stage	4.33e3 4.33e3	85.37084 85.37084	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	5.03e3 5.03e3	82.99599 82.99599	AEIR AEIR
UBERON:0003982	mature ovarian follicle	[+] 1 stage UBERON:0000066fully formed stage	5.89e3 5.89e3	80.10917 80.10917	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	5.89e3 5.89e3	80.08213 80.08213	AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages UBERON:0000068embryo stage ZFS:0000029Pharyngula:Prim-5 UBERON:0004707pharyngula stage ZFS:0000033Hatching:Long-pec ZFS:0000037Larval:Day 5	6.28e3 6.28e3 7.12e3 7.53e3 9.15e3 1.33e4	78.76396 78.76396 75.93105 74.54920 69.06366 55.08337	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	6.80e3 6.80e3	77.02668 77.02668	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	7.27e3 7.27e3	75.43479 75.43479	AEIR AEIR
UBERON:0000948	heart	[+] 1 stage UBERON:0000066fully formed stage	7.74e3 7.74e3	73.82705 73.82705	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	7.96e3 7.96e3	73.08391 73.08391	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	8.74e3 8.74e3	70.46508 70.46508	AEIR AEIR
UBERON:0002113	kidney	[+] 1 stage UBERON:0000066fully formed stage	9.08e3 9.08e3	69.31709 69.31709	AEIR AEIR
UBERON:0000033	head	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000037Larval:Day 5	9.53e3 9.53e3 1.13e4	67.80288 67.80288 61.67447	AEIR AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	1.09e4 1.09e4	63.09803 63.09803	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	1.17e4 1.17e4	60.52592 60.52592	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	1.21e4 1.21e4	59.20775 59.20775	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	1.25e4 1.25e4	57.68678 57.68678	AEIR AEIR
UBERON:0000468	multi-cellular organism	[+] 3 stages ZFS:0000040Larval:Days 14-20 UBERON:0000104life cycle UBERON:0000066fully formed stage	1.43e4 1.43e4 1.48e4 1.49e4	51.56722 51.56722 49.91719 49.80903	AEIR AEIR AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	1.50e4 1.50e4	49.42288 49.42288	AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	1.64e4 1.64e4	44.73632 44.73632	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

EST data: Bgee
RNA-Seq data: Bgee

Sources of raw data:

EST data: UniGene
RNA-Seq data: GEO

Cross-references

EMBL	BX901942
Ensembl	ENSDARG00000018107 (rab3da)
Uniprot/SPTREMBL	B8A665, B8A665_DANRE, B8A666, B8A666_DANRE
ZFIN	ZDB-GENE-080722-14 (rab3da)