D. rerio Gene: atp1a3a - ENSDARG00000018259 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000018259
Nameatp1a3a
DescriptionATPase, Na+/K+ transporting, alpha 3a polypeptide [Source:ZFIN;Acc:ZDB-GENE-001212-7]
OrganismDanio rerio (zebrafish)
Synonym(s)atp1a3b {eco:0000313|ensembl:ensdarp00000095720,gn eco:0000313|zfin:zdb-gene-001212-8}, atp[a]3b, cb705, wu:fj56a06
Orthologs(s)22 orthologs
Paralog(s)9 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
163
  • 163
  • 3.52e3
  • 1.05e4
  • 1.10e4
  • 1.52e4
99.46
  • 99.46
  • 88.22
  • 64.98
  • 63.11
  • 49.10
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
  • ZFS:0000034Hatching:Pec-fin
463
  • 463
  • 1.03e4
  • 1.33e4
  • 1.49e4
98.45
  • 98.45
  • 65.53
  • 55.51
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
474
  • 474
  • 1.13e3
98.42
  • 98.42
  • 96.23
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
762
  • 762
  • 2.26e3
  • 4.42e3
  • 7.76e3
  • 7.93e3
  • 1.09e4
  • 1.29e4
  • 1.65e4
97.45
  • 97.45
  • 92.42
  • 85.21
  • 74.03
  • 73.45
  • 63.63
  • 56.73
  • 44.76
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
1.40e3
  • 1.40e3
  • 2.96e3
  • 3.95e3
95.31
  • 95.31
  • 90.10
  • 86.77
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.81e3
  • 1.81e3
93.95
  • 93.95
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000104life cycle
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
2.51e3
  • 2.51e3
  • 3.46e3
  • 4.27e3
  • 6.01e3
  • 8.07e3
  • 1.06e4
  • 1.23e4
  • 1.38e4
  • 1.39e4
  • 1.43e4
  • 1.46e4
  • 1.47e4
91.61
  • 91.61
  • 88.43
  • 85.71
  • 79.88
  • 72.98
  • 64.48
  • 58.98
  • 53.85
  • 53.49
  • 52.23
  • 51.01
  • 50.68
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
3.18e3
  • 3.18e3
89.35
  • 89.35
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.06e3
  • 4.06e3
86.41
  • 86.41
AEIR
  • AEIR
UBERON:0003070trigeminal placode complex
  • ZFS:0000026Segmentation:14-19 somites
5.34e3
  • 5.34e3
82.14
  • 82.14
AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000034Hatching:Pec-fin
5.60e3
  • 5.60e3
  • 5.98e3
  • 5.98e3
  • 6.22e3
  • 9.60e3
  • 9.60e3
  • 9.96e3
  • 1.07e4
  • 1.49e4
81.24
  • 81.24
  • 79.99
  • 79.99
  • 79.16
  • 67.85
  • 67.85
  • 66.66
  • 64.27
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
5.81e3
  • 5.81e3
  • 7.80e3
  • 7.86e3
  • 8.09e3
  • 9.96e3
  • 1.04e4
  • 1.09e4
80.55
  • 80.55
  • 73.90
  • 73.67
  • 72.90
  • 66.67
  • 65.19
  • 63.61
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000034Hatching:Pec-fin
5.98e3
  • 5.98e3
  • 6.54e3
  • 7.47e3
  • 7.83e3
  • 8.53e3
79.99
  • 79.99
  • 78.12
  • 74.99
  • 73.79
  • 71.43
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
6.29e3
  • 6.29e3
  • 6.29e3
  • 6.64e3
  • 7.47e3
  • 1.08e4
  • 1.10e4
  • 1.10e4
  • 1.12e4
78.94
  • 78.94
  • 78.94
  • 77.77
  • 74.98
  • 63.87
  • 63.14
  • 63.14
  • 62.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000026Segmentation:14-19 somites
6.40e3
  • 6.40e3
78.56
  • 78.56
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000034Hatching:Pec-fin
6.40e3
  • 6.40e3
  • 6.72e3
  • 8.01e3
  • 1.04e4
  • 1.05e4
  • 1.05e4
  • 1.10e4
  • 1.49e4
78.56
  • 78.56
  • 77.49
  • 73.19
  • 65.19
  • 64.98
  • 64.98
  • 63.14
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
6.72e3
  • 6.72e3
  • 7.15e3
  • 7.47e3
  • 7.47e3
77.49
  • 77.49
  • 76.07
  • 74.99
  • 74.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
6.72e3
  • 6.72e3
  • 6.72e3
  • 7.08e3
77.49
  • 77.49
  • 77.49
  • 76.30
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003921pancreas primordium
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
6.79e3
  • 6.79e3
  • 6.89e3
  • 7.47e3
77.27
  • 77.27
  • 76.92
  • 74.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000034Hatching:Pec-fin
7.47e3
  • 7.47e3
  • 7.91e3
  • 7.91e3
  • 1.03e4
  • 1.05e4
  • 1.12e4
  • 1.12e4
  • 1.49e4
74.99
  • 74.99
  • 73.52
  • 73.52
  • 65.61
  • 64.69
  • 62.48
  • 62.48
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
7.47e3
  • 7.47e3
  • 7.47e3
  • 8.15e3
74.99
  • 74.99
  • 74.99
  • 72.71
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
7.47e3
  • 7.47e3
  • 7.47e3
  • 8.01e3
  • 9.96e3
  • 1.02e4
  • 1.02e4
  • 1.05e4
  • 1.09e4
74.99
  • 74.99
  • 74.99
  • 73.19
  • 66.67
  • 65.89
  • 65.77
  • 64.69
  • 63.61
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.88e3
  • 7.88e3
73.63
  • 73.63
AEIR
  • AEIR
UBERON:0010285midbrain basal plate
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
7.91e3
  • 7.91e3
  • 7.91e3
  • 7.91e3
73.52
  • 73.52
  • 73.52
  • 73.52
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
8.54e3
  • 8.54e3
71.41
  • 71.41
AEIR
  • AEIR
UBERON:0002037cerebellum
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000034Hatching:Pec-fin
8.96e3
  • 8.96e3
  • 9.34e3
  • 9.60e3
  • 1.09e4
  • 1.49e4
69.99
  • 69.99
  • 68.74
  • 67.85
  • 63.63
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000004nose
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
9.67e3
  • 9.67e3
  • 9.67e3
  • 1.03e4
  • 1.05e4
67.63
  • 67.63
  • 67.63
  • 65.61
  • 64.69
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000034Hatching:Pec-fin
1.02e4
  • 1.02e4
  • 1.05e4
  • 1.49e4
65.77
  • 65.77
  • 64.69
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.70
  • 58.70
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
  • 1.50e4
57.80
  • 57.80
  • 49.94
AEIR
  • AEIR
  • AEIR
UBERON:0001846internal ear
  • UBERON:0000068embryo stage
1.33e4
  • 1.33e4
55.48
  • 55.48
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.35e4
  • 1.35e4
54.66
  • 54.66
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
54.18
  • 54.18
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
  • 1.70e4
53.10
  • 53.10
  • 43.01
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.49e4
  • 1.49e4
50.18
  • 50.18
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.52e4
  • 1.52e4
49.11
  • 49.11
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.55e4
  • 1.55e4
48.14
  • 48.14
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.56e4
  • 1.56e4
47.89
  • 47.89
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
45.32
  • 45.32
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
44.05
  • 44.05
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.82e4
  • 1.82e4
38.95
  • 38.95
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.90e4
  • 1.90e4
36.45
  • 36.45
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi15 species15 genesCompare expression
Bilateria22 species22 genesCompare expression

Orthology information comes from OMA : ENSDARG00000018259.

Paralogs (same species)

Cross-references

EnsemblENSDARG00000018259 (atp1a3a)
ZFINZDB-GENE-001212-7 (atp1a3a)
EMBLBC064703, BX957262, CR382286
Uniprot/SPTREMBLQ6P271, Q6P271_DANRE

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