Gene: si:ch73-186j5.2 - ENSDARG00000018301 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000018301
Name	si:ch73-186j5.2
Description	si:ch73-186j5.2 [Source:ZFIN;Acc:ZDB-GENE-070705-214]
Organism	Danio rerio (zebrafish)
Orthologs(s)	7 orthologs
Paralog(s)	9 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0004734	gastrula	[+] 1 stage ZFS:0000022Gastrula:Bud	1.64e4 1.64e4	45.21 45.21	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	1.70e4 1.70e4	43.13 43.13	AEIR AEIR
UBERON:0000992	female gonad	[+] 1 stage UBERON:0000066fully formed stage	1.77e4 1.77e4	40.67 40.67	AEIR AEIR
UBERON:0002113	kidney	[+] 1 stage UBERON:0000066fully formed stage	1.96e4 1.96e4	34.21 34.21	AEIR AEIR
UBERON:0000948	heart	[+] 1 stage UBERON:0000066fully formed stage	2.17e4 2.17e4	27.26 27.26	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	2.26e4 2.26e4	24.27 24.27	AEIR AEIR
UBERON:0000922	embryo	[+] 3 stages UBERON:0000068embryo stage ZFS:0000029Pharyngula:Prim-5 UBERON:0004707pharyngula stage	2.29e4 2.29e4 2.38e4 2.72e4	23.21 23.21 20.47 8.89	AEIR AEIR AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	3 species Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	7 genes ENSGALG00000001791 ENSGALG00000001824 ENSGALG00000021450 ENSGALG00000021451 ENSGALG00000027276 ENSACAG00000003065 ENSXETG00000025643 XB-GENE-5918131	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000018301.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Otophysi	1 gene ENSDARG00000069379 zgc:158868	Compare expression	[+]
Eumetazoa	7 genes ENSDARG00000041073 si:dkey-12e7.4 ENSDARG00000046030 zgc:110339 ENSDARG00000069379 zgc:158868 ENSDARG00000099873 zgc:163083 ENSDARG00000101749 zgc:92161 ENSDARG00000102720 zgc:123284 ENSDARG00000104829 zgc:112146	Compare expression	[+]
Opisthokonta	9 genes ENSDARG00000021149 cbr1l ENSDARG00000036587 cbr1 ENSDARG00000041073 si:dkey-12e7.4 ENSDARG00000046030 zgc:110339 ENSDARG00000069379 zgc:158868 ENSDARG00000099873 zgc:163083 ENSDARG00000101749 zgc:92161 ENSDARG00000102720 zgc:123284 ENSDARG00000104829 zgc:112146	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000018301.

Cross-references

Ensembl	ENSDARG00000018301 (si:ch73-186j5.2)
ZFIN	ZDB-GENE-070705-214 (si:ch73-186j5.2)
EMBL	CT573204
Uniprot/SPTREMBL	A5WW48, A5WW48_DANRE