D. rerio Gene: slc6a9 - ENSDARG00000018534 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000018534
Nameslc6a9
Descriptionsolute carrier family 6 (neurotransmitter transporter, glycine), member 9 [Source:ZFIN;Acc:ZDB-GENE-050105-3]
OrganismDanio rerio (zebrafish)
Synonym(s)glyt1, sho, shocked
Orthologs(s)5 orthologs
Paralog(s)29 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
675
  • 675
97.74
  • 97.74
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
2.77e3
  • 2.77e3
  • 3.92e3
  • 4.18e3
  • 4.98e3
  • 6.12e3
  • 1.37e4
  • 1.39e4
  • 1.47e4
  • 1.54e4
90.73
  • 90.73
  • 86.87
  • 85.99
  • 83.31
  • 79.51
  • 54.19
  • 53.53
  • 50.67
  • 48.39
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
3.28e3
  • 3.28e3
  • 3.29e3
89.02
  • 89.02
  • 88.98
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
5.48e3
  • 5.48e3
81.65
  • 81.65
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
5.82e3
  • 5.82e3
  • 8.15e3
  • 8.20e3
80.50
  • 80.50
  • 72.72
  • 72.54
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
7.08e3
  • 7.08e3
  • 1.28e4
76.29
  • 76.29
  • 57.22
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
7.93e3
  • 7.93e3
73.46
  • 73.46
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000019Gastrula:Shield
8.12e3
  • 8.12e3
  • 8.46e3
  • 9.82e3
  • 1.03e4
  • 1.14e4
  • 1.16e4
  • 1.38e4
  • 1.46e4
  • 1.49e4
  • 1.50e4
  • 1.53e4
72.81
  • 72.81
  • 71.68
  • 67.11
  • 65.49
  • 61.77
  • 61.11
  • 53.67
  • 51.22
  • 50.06
  • 49.63
  • 48.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
9.85e3
  • 9.85e3
67.03
  • 67.03
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
63.85
  • 63.85
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.95
  • 62.95
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
  • 1.27e4
61.74
  • 61.74
  • 57.54
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.60
  • 58.60
AEIR
  • AEIR
UBERON:0005068neural rod
  • ZFS:0000026Segmentation:14-19 somites
1.26e4
  • 1.26e4
57.68
  • 57.68
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.27e4
  • 1.27e4
57.34
  • 57.34
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
1.28e4
  • 1.28e4
  • 1.34e4
57.11
  • 57.11
  • 54.97
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.28e4
  • 1.28e4
  • 1.34e4
  • 1.34e4
57.11
  • 57.11
  • 55.24
  • 54.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.32e4
  • 1.32e4
  • 1.39e4
55.70
  • 55.70
  • 53.45
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
55.68
  • 55.68
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000033Hatching:Long-pec
1.34e4
  • 1.34e4
55.24
  • 55.24
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.62
  • 54.62
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.37e4
  • 1.37e4
54.07
  • 54.07
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
1.44e4
  • 1.44e4
  • 1.66e4
  • 1.75e4
51.74
  • 51.74
  • 44.56
  • 41.42
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
50.46
  • 50.46
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
  • 1.49e4
50.19
  • 50.19
  • 49.99
AEIR
  • AEIR
  • AEIR
UBERON:0002422fourth ventricle
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
49.86
  • 49.86
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
48.78
  • 48.78
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.60e4
  • 1.60e4
46.59
  • 46.59
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.74e4
  • 1.74e4
41.85
  • 41.85
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.74e4
  • 1.74e4
41.72
  • 41.72
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Eukaryota29 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000018534.

Cross-references

EnsemblENSDARG00000018534 (slc6a9)
ZFINZDB-GENE-050105-3 (slc6a9)
EMBLBX537271, DQ005477, DQ005478, DQ005479
Uniprot/SPTREMBLA8WHY8, A8WHY8_DANRE, Q4FIV5, Q4FIV5_DANRE, Q4FIV6, Q4FIV6_DANRE, Q4FIV7, Q4FIV7_DANRE

Do not show this banner again