D. rerio Gene: tnfrsf1a - ENSDARG00000018569 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000018569
Nametnfrsf1a
Descriptiontumor necrosis factor receptor superfamily, member 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2252]
OrganismDanio rerio (zebrafish)
Synonym(s)tnf receptor 1 (tr1), tnfr1, wu:fj65b10, zgc:85914
Orthologs(s)18 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000066fully formed stage
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000106zygote stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000037Larval:Day 5
1.66e3
  • 1.66e3
  • 4.98e3
  • 4.98e3
  • 6.54e3
  • 6.64e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.97e3
  • 7.03e3
  • 7.47e3
  • 7.47e3
  • 7.91e3
  • 8.96e3
  • 1.46e4
  • 1.46e4
  • 1.54e4
  • 1.58e4
  • 1.61e4
  • 1.61e4
  • 1.61e4
  • 1.62e4
  • 1.62e4
  • 1.63e4
  • 1.64e4
  • 1.65e4
  • 1.69e4
  • 1.69e4
  • 1.73e4
94.45
  • 94.45
  • 83.33
  • 83.33
  • 78.12
  • 77.77
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 76.66
  • 76.46
  • 74.99
  • 74.99
  • 73.52
  • 69.99
  • 51.12
  • 51.12
  • 48.52
  • 47.13
  • 46.23
  • 45.98
  • 45.95
  • 45.79
  • 45.71
  • 45.28
  • 44.97
  • 44.64
  • 43.39
  • 43.37
  • 42.17
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.85e3
  • 1.85e3
93.81
  • 93.81
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.14e3
  • 2.14e3
92.85
  • 92.85
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
2.16e3
  • 2.16e3
92.78
  • 92.78
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.33e3
  • 2.33e3
92.19
  • 92.19
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.34e3
  • 2.34e3
92.16
  • 92.16
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.54e3
  • 2.54e3
91.51
  • 91.51
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
3.04e3
  • 3.04e3
  • 1.18e4
89.82
  • 89.82
  • 60.49
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
3.67e3
  • 3.67e3
87.71
  • 87.71
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000034Hatching:Pec-fin
3.74e3
  • 3.74e3
  • 5.09e3
  • 9.96e3
87.48
  • 87.48
  • 82.96
  • 66.67
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.16e3
  • 5.16e3
82.71
  • 82.71
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
7.43e3
  • 7.43e3
75.11
  • 75.11
AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000034Hatching:Pec-fin
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0003902retinal neural layer
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
8.58e3
  • 8.58e3
71.28
  • 71.28
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
8.75e3
  • 8.75e3
70.71
  • 70.71
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
8.88e3
  • 8.88e3
  • 9.50e3
  • 1.11e4
  • 1.11e4
  • 1.17e4
  • 1.41e4
  • 1.41e4
70.26
  • 70.26
  • 68.19
  • 62.82
  • 62.75
  • 60.76
  • 52.92
  • 52.72
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
9.13e3
  • 9.13e3
  • 9.96e3
69.43
  • 69.43
  • 66.65
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
9.80e3
  • 9.80e3
67.17
  • 67.17
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000066fully formed stage
9.96e3
  • 9.96e3
  • 1.24e4
  • 1.50e4
66.67
  • 66.67
  • 58.33
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000034Hatching:Pec-fin
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
1.08e4
  • 1.08e4
  • 1.34e4
  • 1.39e4
63.91
  • 63.91
  • 54.99
  • 53.37
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
1.24e4
  • 1.24e4
  • 1.32e4
  • 1.44e4
58.62
  • 58.62
  • 55.89
  • 51.89
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.25e4
  • 1.25e4
58.04
  • 58.04
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000033Hatching:Long-pec
1.29e4
  • 1.29e4
56.65
  • 56.65
AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
1.32e4
  • 1.32e4
  • 1.34e4
55.86
  • 55.86
  • 54.97
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000033Hatching:Long-pec
1.34e4
  • 1.34e4
55.24
  • 55.24
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000033Hatching:Long-pec
1.34e4
  • 1.34e4
54.97
  • 54.97
AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000033Hatching:Long-pec
1.34e4
  • 1.34e4
54.97
  • 54.97
AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000033Hatching:Long-pec
1.41e4
  • 1.41e4
52.75
  • 52.75
AEIR
  • AEIR
UBERON:0008897fin
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.86
  • 50.86
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
1.48e4
  • 1.48e4
  • 1.75e4
50.59
  • 50.59
  • 41.42
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
1.60e4
  • 1.60e4
46.47
  • 46.47
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.68e4
  • 1.68e4
43.91
  • 43.91
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Cross-references

EnsemblENSDARG00000018569 (tnfrsf1a)
ZFINZDB-GENE-040426-2252 (tnfrsf1a)
EMBLCR533575
Uniprot/SPTREMBLF1QQS0, F1QQS0_DANRE

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