D. rerio Gene: sf3b4 - ENSDARG00000018574 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000018574
Namesf3b4
Descriptionsplicing factor 3b, subunit 4 [Source:ZFIN;Acc:ZDB-GENE-020419-22]
OrganismDanio rerio (zebrafish)
Synonym(s)chunp6902, fb36a04, wu:fb36a04
Orthologs(s)23 orthologs
Paralog(s)9 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
363
  • 363
98.79
  • 98.79
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000021Gastrula:90%-epiboly
382
  • 382
  • 712
  • 1.11e3
  • 1.66e3
  • 1.70e3
  • 1.93e3
98.73
  • 98.73
  • 97.62
  • 96.30
  • 94.45
  • 94.31
  • 93.54
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
426
  • 426
  • 467
  • 1.66e3
  • 2.07e3
  • 3.17e3
98.58
  • 98.58
  • 98.44
  • 94.44
  • 93.09
  • 89.40
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
752
  • 752
97.49
  • 97.49
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
1.26e3
  • 1.26e3
  • 1.45e3
  • 1.47e3
  • 1.65e3
  • 1.91e3
  • 2.05e3
  • 2.14e3
  • 3.15e3
  • 4.60e3
  • 5.70e3
95.78
  • 95.78
  • 95.14
  • 95.08
  • 94.46
  • 93.62
  • 93.14
  • 92.82
  • 89.45
  • 84.61
  • 80.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
1.38e3
  • 1.38e3
  • 7.97e3
  • 1.21e4
95.39
  • 95.39
  • 73.30
  • 59.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.55e3
  • 1.55e3
94.82
  • 94.82
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000106zygote stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000036Larval:Day 4
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000037Larval:Day 5
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • ZFS:0000049segmentation
  • UBERON:0000104life cycle
1.70e3
  • 1.70e3
  • 1.89e3
  • 2.01e3
  • 2.50e3
  • 2.80e3
  • 3.26e3
  • 3.38e3
  • 4.18e3
  • 4.86e3
  • 4.98e3
  • 5.80e3
  • 6.54e3
  • 6.64e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.87e3
  • 6.97e3
  • 7.03e3
  • 7.40e3
  • 7.47e3
  • 7.47e3
  • 7.61e3
  • 7.91e3
  • 8.91e3
  • 8.96e3
  • 8.96e3
  • 1.39e4
  • 1.45e4
  • 1.45e4
  • 1.50e4
94.30
  • 94.30
  • 93.68
  • 93.27
  • 91.63
  • 90.63
  • 89.08
  • 88.69
  • 86.00
  • 83.72
  • 83.33
  • 80.59
  • 78.12
  • 77.77
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 76.99
  • 76.66
  • 76.46
  • 75.22
  • 74.99
  • 74.99
  • 74.51
  • 73.52
  • 70.18
  • 69.99
  • 69.99
  • 53.44
  • 51.56
  • 51.51
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.28e3
  • 2.28e3
92.36
  • 92.36
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.57e3
  • 2.57e3
91.41
  • 91.41
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.78e3
  • 2.78e3
90.70
  • 90.70
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
2.95e3
  • 2.95e3
90.12
  • 90.12
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
3.03e3
  • 3.03e3
89.84
  • 89.84
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
3.21e3
  • 3.21e3
  • 3.39e3
  • 1.02e4
  • 1.02e4
89.25
  • 89.25
  • 88.65
  • 65.73
  • 65.70
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
3.24e3
  • 3.24e3
  • 1.03e4
89.17
  • 89.17
  • 65.39
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
3.48e3
  • 3.48e3
88.37
  • 88.37
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.48e3
  • 3.48e3
88.34
  • 88.34
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
3.64e3
  • 3.64e3
  • 1.47e4
87.83
  • 87.83
  • 50.88
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.65e3
  • 3.65e3
87.79
  • 87.79
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.06e3
  • 4.06e3
86.40
  • 86.40
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.10e3
  • 4.10e3
86.29
  • 86.29
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
4.14e3
  • 4.14e3
86.13
  • 86.13
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
4.20e3
  • 4.20e3
85.94
  • 85.94
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
5.18e3
  • 5.18e3
  • 5.60e3
  • 5.97e3
82.67
  • 82.67
  • 81.26
  • 80.03
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
5.33e3
  • 5.33e3
  • 8.72e3
82.15
  • 82.15
  • 70.80
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.58e3
  • 5.58e3
81.32
  • 81.32
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.90e3
  • 5.90e3
80.23
  • 80.23
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
6.01e3
  • 6.01e3
79.87
  • 79.87
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
7.01e3
  • 7.01e3
  • 9.61e3
76.54
  • 76.54
  • 67.82
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
7.13e3
  • 7.13e3
76.14
  • 76.14
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
8.02e3
  • 8.02e3
73.14
  • 73.14
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.80e3
  • 9.80e3
67.18
  • 67.18
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
57.79
  • 57.79
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.34e4
  • 1.34e4
55.16
  • 55.16
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi17 species17 genesCompare expression
Bilateria23 species23 genesCompare expression

Orthology information comes from OMA : ENSDARG00000018574.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Opisthokonta9 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000018574.

Cross-references

EnsemblENSDARG00000018574 (sf3b4)
ZFINZDB-GENE-020419-22 (sf3b4)
EMBLBC056532, BC067655, BX890617, BX927401, FP085396
Uniprot/SPTREMBLQ6NWB3, Q6NWB3_DANRE

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