D. rerio Gene: cpsf6 - ENSDARG00000018618 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000018618
Namecpsf6
Descriptioncleavage and polyadenylation specific factor 6 [Source:ZFIN;Acc:ZDB-GENE-030131-5277]
OrganismDanio rerio (zebrafish)
Synonym(s)q6th26, wu:fa22f12, zgc:85819

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
481
  • 481
98.37608
  • 98.37608
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
873
  • 873
  • 877
  • 1.15e3
  • 1.34e3
  • 1.92e3
  • 1.94e3
  • 2.08e3
  • 2.26e3
  • 3.63e3
  • 1.24e4
97.05271
  • 97.05271
  • 97.03919
  • 96.12223
  • 95.48270
  • 93.50129
  • 93.43860
  • 92.98569
  • 92.36571
  • 87.72312
  • 58.12124
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000106zygote stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • UBERON:0000104life cycle
  • ZFS:0000049segmentation
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
1.03e3
  • 1.03e3
  • 1.40e3
  • 1.54e3
  • 1.85e3
  • 1.93e3
  • 1.97e3
  • 2.05e3
  • 2.22e3
  • 2.57e3
  • 3.07e3
  • 3.83e3
  • 3.94e3
  • 4.93e3
  • 5.04e3
  • 5.21e3
  • 6.48e3
  • 6.58e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.91e3
  • 6.97e3
  • 7.40e3
  • 7.40e3
  • 7.84e3
  • 8.88e3
  • 8.88e3
  • 1.10e4
  • 1.43e4
  • 1.45e4
  • 1.46e4
96.53060
  • 96.53060
  • 95.27359
  • 94.79574
  • 93.74333
  • 93.49602
  • 93.36049
  • 93.06165
  • 92.50955
  • 91.31139
  • 89.62709
  • 87.07036
  • 86.67886
  • 83.32826
  • 82.98281
  • 82.40823
  • 78.11654
  • 77.76763
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 76.65821
  • 76.46123
  • 74.99322
  • 74.99322
  • 73.51758
  • 69.98817
  • 69.98817
  • 62.68426
  • 51.51349
  • 51.11845
  • 50.60365
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.23e3
  • 1.23e3
  • 2.93e3
95.83950
  • 95.83950
  • 90.11035
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
1.43e3
  • 1.43e3
  • 1.67e3
  • 1.67e3
  • 3.27e3
  • 3.36e3
95.16435
  • 95.16435
  • 94.36709
  • 94.34766
  • 88.95922
  • 88.65300
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.61e3
  • 1.61e3
94.56171
  • 94.56171
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.80e3
  • 1.80e3
93.91952
  • 93.91952
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.96e3
  • 1.96e3
93.38803
  • 93.38803
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.01e3
  • 2.01e3
93.21988
  • 93.21988
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.16e3
  • 2.16e3
92.71627
  • 92.71627
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.43e3
  • 2.43e3
91.80707
  • 91.80707
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.48e3
  • 2.48e3
91.62794
  • 91.62794
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.63e3
  • 2.63e3
91.10058
  • 91.10058
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
2.64e3
  • 2.64e3
  • 5.93e3
  • 6.08e3
91.09357
  • 91.09357
  • 79.96542
  • 79.45972
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.72e3
  • 2.72e3
90.81000
  • 90.81000
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
2.93e3
  • 2.93e3
  • 6.00e3
  • 8.22e3
90.08419
  • 90.08419
  • 79.71274
  • 72.21513
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.70e3
  • 3.70e3
87.49768
  • 87.49768
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
3.85e3
  • 3.85e3
86.98163
  • 86.98163
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
4.38e3
  • 4.38e3
  • 1.20e4
85.19389
  • 85.19389
  • 59.59010
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
4.92e3
  • 4.92e3
  • 7.82e3
  • 8.88e3
  • 9.42e3
  • 1.21e4
83.38638
  • 83.38638
  • 73.56862
  • 69.99324
  • 68.17336
  • 59.07907
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
5.61e3
  • 5.61e3
  • 9.69e3
81.03506
  • 81.03506
  • 67.24081
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
6.39e3
  • 6.39e3
78.41830
  • 78.41830
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
7.15e3
  • 7.15e3
75.84561
  • 75.84561
AEIR
  • AEIR
UBERON:2000084yolk
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
75.00167
  • 75.00167
  • 75.00167
  • 75.00167
AEIR
  • AEIR
  • AEIR
  • AEIR
ZFA:0000093blastomere (Danio)
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • UBERON:00072322 cell stage
7.40e3
  • 7.40e3
  • 7.40e3
  • 9.86e3
74.99998
  • 74.99998
  • 74.99998
  • 66.66666
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
7.51e3
  • 7.51e3
74.63515
  • 74.63515
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
9.11e3
  • 9.11e3
69.20202
  • 69.20202
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
9.18e3
  • 9.18e3
  • 9.72e3
  • 1.28e4
  • 1.29e4
68.96568
  • 68.96568
  • 67.14703
  • 56.64807
  • 56.35576
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
9.23e3
  • 9.23e3
68.80082
  • 68.80082
AEIR
  • AEIR
UBERON:0001555digestive tract
  • ZFS:0000035Larval:Protruding-mouth
9.25e3
  • 9.25e3
68.74493
  • 68.74493
AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
1.02e4
  • 1.02e4
  • 1.06e4
65.60979
  • 65.60979
  • 64.27218
AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000029Pharyngula:Prim-5
1.17e4
  • 1.17e4
60.50435
  • 60.50435
AEIR
  • AEIR
UBERON:0001042chordate pharynx
  • ZFS:0000035Larval:Protruding-mouth
1.18e4
  • 1.18e4
59.99662
  • 59.99662
AEIR
  • AEIR
UBERON:0005886post-hyoid pharyngeal arch skeleton
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
1.22e4
  • 1.22e4
  • 1.25e4
  • 1.27e4
58.80324
  • 58.80324
  • 57.87109
  • 57.13609
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000949endocrine system
  • ZFS:0000035Larval:Protruding-mouth
1.48e4
  • 1.48e4
49.99662
  • 49.99662
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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