D. rerio Gene: slc6a19a.1 - ENSDARG00000018621 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000018621
Nameslc6a19a.1
Descriptionsolute carrier family 6 (neutral amino acid transporter), member 19a, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-070620-2]
OrganismDanio rerio (zebrafish)
Synonym(s)slc6a19a, zgc:162095
Orthologs(s)19 orthologs
Paralog(s)29 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.02e3
  • 1.02e3
96.57
  • 96.57
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
5.15e3
  • 5.15e3
82.76
  • 82.76
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000066fully formed stage
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
1.06e4
  • 1.06e4
  • 1.16e4
  • 1.45e4
  • 1.50e4
  • 1.66e4
  • 1.70e4
  • 1.80e4
  • 1.81e4
64.43
  • 64.43
  • 61.31
  • 51.60
  • 49.81
  • 44.47
  • 43.24
  • 39.85
  • 39.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.08e4
  • 1.08e4
  • 1.36e4
  • 1.41e4
63.99
  • 63.99
  • 54.42
  • 52.69
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
60.91
  • 60.91
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.37
  • 54.37
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.83
  • 50.83
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
1.48e4
  • 1.48e4
  • 1.73e4
  • 1.78e4
  • 1.78e4
  • 1.89e4
  • 1.91e4
  • 2.13e4
50.39
  • 50.39
  • 41.92
  • 40.54
  • 40.40
  • 36.72
  • 36.14
  • 28.59
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.65e4
  • 1.65e4
  • 1.96e4
44.84
  • 44.84
  • 34.41
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
1.65e4
  • 1.65e4
44.78
  • 44.78
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
44.23
  • 44.23
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
42.93
  • 42.93
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.79e4
  • 1.79e4
40.11
  • 40.11
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
2.06e4
  • 2.06e4
31.15
  • 31.15
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.27e4
  • 2.27e4
24.08
  • 24.08
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.45e4
  • 2.45e4
18.01
  • 18.01
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Clupeocephala1 geneCompare expression
Eukaryota29 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000018621.

Cross-references

EnsemblENSDARG00000018621 (slc6a19a.1)
ZFINZDB-GENE-070620-2 (slc6a19a.1)
EMBLBC139855, CU856173
Uniprot/SPTREMBLA5D6R9, A5D6R9_DANRE

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