Gene: slc6a19a.1 - ENSDARG00000018621 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000018621
Name	slc6a19a.1
Description	solute carrier family 6 (neutral amino acid transporter), member 19a, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-070620-2]
Organism	Danio rerio (zebrafish)
Synonym(s)	slc6a19a, zgc:162095
Orthologs(s)	19 orthologs
Paralog(s)	29 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	1.02e3 1.02e3	96.57 96.57	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	5.15e3 5.15e3	82.76 82.76	AEIR AEIR
UBERON:0000468	multi-cellular organism	[+] 8 stages ZFS:0000036Larval:Day 4 ZFS:0000037Larval:Day 5 ZFS:0000040Larval:Days 14-20 UBERON:0000066fully formed stage ZFS:0000042Juvenile:Days 30-44 ZFS:0000029Pharyngula:Prim-5 ZFS:0000030Pharyngula:Prim-15 ZFS:0000033Hatching:Long-pec	1.06e4 1.06e4 1.16e4 1.45e4 1.50e4 1.66e4 1.70e4 1.80e4 1.81e4	64.43 64.43 61.31 51.60 49.81 44.47 43.24 39.85 39.42	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0002548	larva	[+] 3 stages ZFS:0000037Larval:Day 5 UBERON:0000069larval stage ZFS:0000035Larval:Protruding-mouth	1.08e4 1.08e4 1.36e4 1.41e4	63.99 63.99 54.42 52.69	AEIR AEIR AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	1.17e4 1.17e4	60.91 60.91	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	1.36e4 1.36e4	54.37 54.37	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	1.47e4 1.47e4	50.83 50.83	AEIR AEIR
UBERON:0000922	embryo	[+] 7 stages ZFS:0000037Larval:Day 5 ZFS:0000029Pharyngula:Prim-5 ZFS:0000031Pharyngula:Prim-25 ZFS:0000025Segmentation:10-13 somites UBERON:0000068embryo stage UBERON:0004707pharyngula stage ZFS:0000033Hatching:Long-pec	1.48e4 1.48e4 1.73e4 1.78e4 1.78e4 1.89e4 1.91e4 2.13e4	50.39 50.39 41.92 40.54 40.40 36.72 36.14 28.59	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000033	head	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000037Larval:Day 5	1.65e4 1.65e4 1.96e4	44.84 44.84 34.41	AEIR AEIR AEIR
UBERON:0000966	retina	[+] 1 stage UBERON:0000066fully formed stage	1.65e4 1.65e4	44.78 44.78	AEIR AEIR
UBERON:0002199	integument	[+] 1 stage UBERON:0000066fully formed stage	1.67e4 1.67e4	44.23 44.23	AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	1.70e4 1.70e4	42.93 42.93	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	1.79e4 1.79e4	40.11 40.11	AEIR AEIR
UBERON:0000948	heart	[+] 1 stage UBERON:0000066fully formed stage	2.06e4 2.06e4	31.15 31.15	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	2.27e4 2.27e4	24.08 24.08	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	2.45e4 2.45e4	18.01 18.01	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

Affymetrix data: Bgee
EST data: Bgee
RNA-Seq data: Bgee

Sources of raw data:

Affymetrix data: ArrayExpress, GEO
EST data: UniGene
RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	18 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Monodelphis domestica (opossum) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	19 genes ENSG00000174358 SLC6A19 ENSMUSG00000021565 Slc6a19 ENSPTRG00000016694 SLC6A19 ENSGGOG00000007544 SLC6A19 ENSMMUG00000010935 SLC6A19 ENSRNOG00000026501 Slc6a19 ENSBTAG00000045695 SLC6A19 ENSSSCG00000017120 SLC6A19 ENSECAG00000015357 SLC6A19 ENSOCUG00000007875 ENSOCUG00000017357 ENSCAFG00000025130 SLC6A19 ENSFCAG00000009541 SLC6A19 ENSCPOG00000010563 SLC6A19 ENSMODG00000000905 SLC6A19 ENSOANG00000014448 SLC6A19 ENSGALG00000019527 SLC6A19 ENSACAG00000001587 SLC6A19 ENSXETG00000015619 slc6a19	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000018621.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Clupeocephala	1 gene ENSDARG00000091560 slc6a19a.2	Compare expression	[+]
Eukaryota	29 genes ENSDARG00000000730 slc6a13 ENSDARG00000001354 slc6a13l ENSDARG00000002405 si:ch211-225b11.1 ENSDARG00000004219 SLC6A3 ENSDARG00000012534 slc6a6a ENSDARG00000016141 slc6a2 ENSDARG00000018534 slc6a9 ENSDARG00000029866 slc6a14 ENSDARG00000030006 SLC6A7 ENSDARG00000039647 slc6a1b ENSDARG00000041205 slc6a1l ENSDARG00000043646 slc6a8 ENSDARG00000045944 slc6a1a ENSDARG00000046091 si:ch211-283g2.1 ENSDARG00000057017 slc6a4b ENSDARG00000061165 slc6a4a ENSDARG00000061480 si:ch211-132b12.1 ENSDARG00000062821 slc6a15 ENSDARG00000067567 SLC6A13 ENSDARG00000068363 si:ch211-132b12.3 ENSDARG00000068372 zgc:158427 ENSDARG00000068387 slc6a18 ENSDARG00000071235 si:ch211-117c9.5 ENSDARG00000074002 slc6a11a ENSDARG00000087981 slc6a11b ENSDARG00000091560 slc6a19a.2 ENSDARG00000094546 si:ch211-132b12.6 ENSDARG00000094946 si:ch211-132b12.2 ENSDARG00000098438 slc6a6b	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000018621.

Cross-references

Ensembl	ENSDARG00000018621 (slc6a19a.1)
ZFIN	ZDB-GENE-070620-2 (slc6a19a.1)
EMBL	BC139855, CU856173
Uniprot/SPTREMBL	A5D6R9, A5D6R9_DANRE