D. rerio Gene: phf2 - ENSDARG00000018691 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000018691
Namephf2
DescriptionPHD finger protein 2 [Source:ZFIN;Acc:ZDB-GENE-050302-10]
OrganismDanio rerio (zebrafish)
Synonym(s)im:4200679, phf8, wu:fa14c10
Orthologs(s)18 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
3.36e3
  • 3.36e3
  • 4.55e3
  • 6.01e3
88.75
  • 88.75
  • 84.76
  • 79.88
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000106zygote stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000019Gastrula:Shield
3.62e3
  • 3.62e3
  • 4.87e3
  • 5.85e3
  • 5.88e3
  • 6.37e3
  • 6.43e3
  • 7.80e3
  • 8.22e3
  • 8.61e3
  • 9.53e3
  • 9.81e3
  • 1.00e4
  • 1.03e4
  • 1.18e4
87.87
  • 87.87
  • 83.70
  • 80.42
  • 80.30
  • 78.66
  • 78.49
  • 73.87
  • 72.47
  • 71.17
  • 68.08
  • 67.14
  • 66.40
  • 65.51
  • 60.44
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
4.37e3
  • 4.37e3
85.35
  • 85.35
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
4.40e3
  • 4.40e3
  • 6.07e3
  • 7.67e3
  • 8.04e3
  • 8.38e3
  • 1.01e4
  • 1.03e4
  • 1.15e4
  • 1.21e4
  • 1.23e4
85.26
  • 85.26
  • 79.67
  • 74.32
  • 73.09
  • 71.94
  • 66.35
  • 65.35
  • 61.63
  • 59.58
  • 58.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
4.78e3
  • 4.78e3
  • 8.35e3
84.01
  • 84.01
  • 72.03
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.71e3
  • 5.71e3
80.88
  • 80.88
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
5.79e3
  • 5.79e3
  • 1.14e4
80.63
  • 80.63
  • 61.91
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
7.69e3
  • 7.69e3
  • 8.25e3
  • 8.69e3
74.26
  • 74.26
  • 72.36
  • 70.90
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
7.78e3
  • 7.78e3
73.94
  • 73.94
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
7.80e3
  • 7.80e3
73.88
  • 73.88
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
8.39e3
  • 8.39e3
  • 9.48e3
71.90
  • 71.90
  • 68.26
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
8.56e3
  • 8.56e3
  • 1.03e4
71.32
  • 71.32
  • 65.46
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
8.70e3
  • 8.70e3
70.86
  • 70.86
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
8.90e3
  • 8.90e3
70.20
  • 70.20
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
9.10e3
  • 9.10e3
69.53
  • 69.53
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
9.56e3
  • 9.56e3
67.99
  • 67.99
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
9.79e3
  • 9.79e3
67.22
  • 67.22
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.81e3
  • 9.81e3
67.17
  • 67.17
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
9.82e3
  • 9.82e3
67.13
  • 67.13
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
9.88e3
  • 9.88e3
66.91
  • 66.91
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
9.95e3
  • 9.95e3
66.69
  • 66.69
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
1.01e4
  • 1.01e4
  • 1.05e4
  • 1.27e4
  • 1.31e4
  • 1.53e4
66.25
  • 66.25
  • 64.87
  • 57.34
  • 56.04
  • 48.83
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
1.09e4
  • 1.09e4
  • 1.09e4
  • 1.11e4
  • 1.12e4
  • 1.24e4
  • 1.39e4
63.63
  • 63.63
  • 63.50
  • 62.76
  • 62.47
  • 58.38
  • 53.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.87
  • 62.87
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.68
  • 62.68
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
60.92
  • 60.92
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.83
  • 58.83
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.27e4
  • 1.27e4
57.44
  • 57.44
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
55.69
  • 55.69
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000018691.

Cross-references

EnsemblENSDARG00000018691 (phf2)
ZFINZDB-GENE-050302-10 (phf2)
EMBLBX601648
Uniprot/SPTREMBLF1Q721, F1Q721_DANRE, F6NB59, F6NB59_DANRE

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