D. rerio Gene: cdh2 - ENSDARG00000018693 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000018693
Namecdh2
Descriptioncadherin 2, type 1, N-cadherin (neuronal) [Source:ZFIN;Acc:ZDB-GENE-990415-171]
OrganismDanio rerio (zebrafish)
Synonym(s)glass onion, glo, labyrinth, lyr, n-cadherin, ncad, neural cadherin, pac, parachute, wu:fb47h04, zncad

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
207
  • 207
  • 1.34e4
99.31
  • 99.31
  • 54.99
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
339
  • 339
  • 1.35e4
98.87
  • 98.87
  • 54.73
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000026Segmentation:14-19 somites
352
  • 352
  • 1.29e4
  • 1.39e4
98.83
  • 98.83
  • 56.79
  • 53.41
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
518
  • 518
  • 903
  • 1.42e4
98.27
  • 98.27
  • 96.98
  • 52.60
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • ZFS:0000049segmentation
558
  • 558
  • 918
  • 992
  • 1.01e3
  • 1.19e3
  • 1.24e3
  • 1.43e3
  • 1.67e3
  • 1.77e3
  • 1.95e3
  • 2.31e3
  • 2.98e3
  • 3.60e3
  • 1.47e4
  • 1.49e4
  • 1.49e4
98.14
  • 98.14
  • 96.93
  • 96.68
  • 96.60
  • 96.02
  • 95.84
  • 95.20
  • 94.42
  • 94.07
  • 93.48
  • 92.27
  • 90.01
  • 87.95
  • 50.90
  • 50.25
  • 49.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
588
  • 588
98.03
  • 98.03
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
682
  • 682
  • 1.25e3
  • 1.45e3
  • 1.60e3
  • 1.98e3
  • 3.47e3
97.72
  • 97.72
  • 95.81
  • 95.15
  • 94.63
  • 93.36
  • 88.38
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
802
  • 802
  • 993
  • 1.04e3
  • 1.09e3
  • 1.17e3
  • 1.30e3
  • 1.44e3
  • 1.76e3
  • 2.27e3
  • 2.34e3
97.32
  • 97.32
  • 96.68
  • 96.53
  • 96.37
  • 96.08
  • 95.67
  • 95.17
  • 94.11
  • 92.39
  • 92.18
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
853
  • 853
  • 1.22e3
  • 1.80e3
  • 5.25e3
97.15
  • 97.15
  • 95.92
  • 93.99
  • 82.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
973
  • 973
96.75
  • 96.75
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
1.15e3
  • 1.15e3
96.14
  • 96.14
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000104life cycle
1.40e3
  • 1.40e3
  • 2.80e3
  • 8.96e3
  • 1.41e4
95.30
  • 95.30
  • 90.63
  • 69.99
  • 52.72
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.43e3
  • 1.43e3
  • 3.89e3
95.21
  • 95.21
  • 86.97
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
1.90e3
  • 1.90e3
  • 1.98e3
  • 2.16e3
93.64
  • 93.64
  • 93.37
  • 92.76
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
2.23e3
  • 2.23e3
  • 8.01e3
92.52
  • 92.52
  • 73.18
AEIR
  • AEIR
  • AEIR
UBERON:2001157posterior lateral line primordium
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
2.49e3
  • 2.49e3
  • 7.47e3
  • 1.36e4
91.67
  • 91.67
  • 75.00
  • 54.53
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.52e3
  • 2.52e3
91.57
  • 91.57
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
2.61e3
  • 2.61e3
91.27
  • 91.27
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.80e3
  • 2.80e3
90.62
  • 90.62
AEIR
  • AEIR
UBERON:0005419pectoral appendage bud
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
4.98e3
  • 4.98e3
  • 1.28e4
83.34
  • 83.34
  • 57.12
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.06e3
  • 5.06e3
83.06
  • 83.06
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.73e3
  • 5.73e3
80.82
  • 80.82
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
6.48e3
  • 6.48e3
78.30
  • 78.30
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.92e3
  • 6.92e3
76.85
  • 76.85
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
7.08e3
  • 7.08e3
76.30
  • 76.30
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
7.36e3
  • 7.36e3
  • 9.41e3
  • 1.13e4
75.36
  • 75.36
  • 68.48
  • 62.23
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001083myocardium of ventricle
  • ZFS:0000035Larval:Protruding-mouth
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0003064intermediate mesoderm
  • ZFS:0000022Gastrula:Bud
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0003080anterior neural tube
  • ZFS:0000026Segmentation:14-19 somites
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:2000711DEL
  • ZFS:0000017Gastrula:50%-epiboly
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:2007024anterior neural keel
  • ZFS:0000023Segmentation:1-4 somites
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
8.53e3
  • 8.53e3
  • 8.54e3
  • 8.71e3
  • 8.96e3
  • 8.96e3
  • 8.96e3
  • 9.13e3
  • 9.96e3
71.43
  • 71.43
  • 71.42
  • 70.82
  • 69.99
  • 69.99
  • 69.99
  • 69.43
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
8.82e3
  • 8.82e3
70.46
  • 70.46
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
8.91e3
  • 8.91e3
70.15
  • 70.15
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.19e3
  • 9.19e3
69.23
  • 69.23
AEIR
  • AEIR
UBERON:0003068axial mesoderm
  • ZFS:0000021Gastrula:90%-epiboly
9.33e3
  • 9.33e3
68.74
  • 68.74
AEIR
  • AEIR
UBERON:0002346neurectoderm
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000023Segmentation:1-4 somites
9.96e3
  • 9.96e3
  • 1.12e4
66.67
  • 66.67
  • 62.50
AEIR
  • AEIR
  • AEIR
UBERON:2007031anterior neural rod
  • ZFS:0000024Segmentation:5-9 somites
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.88
  • 65.88
AEIR
  • AEIR
ZFA:0000023forerunner cell group (Danio)
  • ZFS:0000019Gastrula:Shield
1.03e4
  • 1.03e4
65.37
  • 65.37
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.25
  • 64.25
AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
1.14e4
  • 1.14e4
  • 1.39e4
  • 1.42e4
61.88
  • 61.88
  • 53.31
  • 52.60
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0008904neuromast
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
1.16e4
  • 1.16e4
  • 1.24e4
  • 1.37e4
61.10
  • 61.10
  • 58.32
  • 54.15
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004152bulbus arteriosus
  • ZFS:0000035Larval:Protruding-mouth
1.19e4
  • 1.19e4
60.00
  • 60.00
AEIR
  • AEIR
ZFA:0000003adaxial cell (Danio)
  • ZFS:0000027Segmentation:20-25 somites
1.19e4
  • 1.19e4
60.00
  • 60.00
AEIR
  • AEIR
UBERON:0003062primitive knot
  • ZFS:0000019Gastrula:Shield
1.22e4
  • 1.22e4
59.08
  • 59.08
AEIR
  • AEIR
UBERON:2000088YSL
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000016Blastula:30%-epiboly
1.23e4
  • 1.23e4
  • 1.28e4
  • 1.31e4
58.80
  • 58.80
  • 57.13
  • 56.24
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000089hypoblast (generic)
  • ZFS:0000019Gastrula:Shield
1.24e4
  • 1.24e4
58.33
  • 58.33
AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000022Gastrula:Bud
1.24e4
  • 1.24e4
58.33
  • 58.33
AEIR
  • AEIR
UBERON:0002037cerebellum
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
1.25e4
  • 1.25e4
  • 1.31e4
58.31
  • 58.31
  • 56.23
AEIR
  • AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000027Segmentation:20-25 somites
1.25e4
  • 1.25e4
58.31
  • 58.31
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
1.28e4
  • 1.28e4
  • 1.30e4
  • 1.34e4
  • 1.42e4
57.11
  • 57.11
  • 56.49
  • 54.97
  • 52.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
1.28e4
  • 1.28e4
57.11
  • 57.11
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
  • 1.32e4
  • 1.37e4
  • 1.42e4
56.65
  • 56.65
  • 55.82
  • 54.15
  • 52.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
1.31e4
  • 1.31e4
  • 1.36e4
56.22
  • 56.22
  • 54.52
AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
1.35e4
  • 1.35e4
  • 1.41e4
54.73
  • 54.73
  • 52.75
AEIR
  • AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000029Pharyngula:Prim-5
1.35e4
  • 1.35e4
54.73
  • 54.73
AEIR
  • AEIR
UBERON:0005498primitive heart tube
  • ZFS:0000029Pharyngula:Prim-5
1.39e4
  • 1.39e4
53.31
  • 53.31
AEIR
  • AEIR
UBERON:0004141heart tube
  • ZFS:0000031Pharyngula:Prim-25
1.41e4
  • 1.41e4
52.75
  • 52.75
AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000040Larval:Days 14-20
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002302myocardium of atrium
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0007269pectoral appendage musculature
  • ZFS:0000034Hatching:Pec-fin
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0007284presumptive neural plate
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:2005227protoneuromast
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0007135neural keel
  • ZFS:0000025Segmentation:10-13 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
43.99
  • 43.99
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EnsemblENSDARG00000018693 (cdh2)
ZFINZDB-GENE-990415-171 (cdh2)
EMBLCR759908, CT827862
Uniprot/SPTREMBLG1K2E7, G1K2E7_DANRE

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