D. rerio Gene: cdh2 - ENSDARG00000018693 - Danio rerio (zebrafish)

Gene Information

Ensembl IDENSDARG00000018693
Namecdh2
Descriptioncadherin 2, type 1, N-cadherin (neuronal) [Source:ZFIN;Acc:ZDB-GENE-990415-171]
OrganismDanio rerio (zebrafish)

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreSources
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
205
  • 205
  • 1.33e4
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
337
  • 337
  • 1.34e4
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000026Segmentation:14-19 somites
349
  • 349
  • 1.28e4
  • 1.38e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • ZFS:0000049segmentation
554
  • 554
  • 912
  • 985
  • 1.01e3
  • 1.18e3
  • 1.23e3
  • 1.42e3
  • 1.66e3
  • 1.76e3
  • 1.94e3
  • 2.29e3
  • 2.96e3
  • 3.58e3
  • 1.45e4
  • 1.47e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
584
  • 584
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
797
  • 797
  • 993
  • 1.03e3
  • 1.04e3
  • 1.08e3
  • 1.17e3
  • 1.29e3
  • 1.76e3
  • 2.26e3
  • 2.32e3
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
847
  • 847
  • 1.21e3
  • 5.22e3
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
884
  • 884
  • 1.24e3
  • 1.44e3
  • 1.59e3
  • 1.97e3
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
958
  • 958
  • 1.40e4
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
966
  • 966
  • 1.97e3
  • 1.98e3
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
973
  • 973
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000104life cycle
1.11e3
  • 1.11e3
  • 2.78e3
  • 8.88e3
  • 1.40e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
1.14e3
  • 1.14e3
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.43e3
  • 1.43e3
  • 3.89e3
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
2.22e3
  • 2.22e3
  • 7.95e3
AEIR
  • AEIR
  • AEIR
UBERON:2001157posterior lateral line primordium
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
2.47e3
  • 2.47e3
  • 7.40e3
  • 1.35e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
2.61e3
  • 2.61e3
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.94e3
  • 2.94e3
AEIR
  • AEIR
UBERON:0005419pectoral appendage bud
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
4.93e3
  • 4.93e3
  • 1.27e4
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.73e3
  • 5.73e3
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
6.35e3
  • 6.35e3
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.92e3
  • 6.92e3
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
7.08e3
  • 7.08e3
AEIR
  • AEIR
UBERON:0001083myocardium of ventricle
  • ZFS:0000035Larval:Protruding-mouth
7.40e3
  • 7.40e3
AEIR
  • AEIR
UBERON:0003064intermediate mesoderm
  • ZFS:0000022Gastrula:Bud
7.40e3
  • 7.40e3
AEIR
  • AEIR
UBERON:0003080anterior neural tube
  • ZFS:0000026Segmentation:14-19 somites
7.40e3
  • 7.40e3
AEIR
  • AEIR
UBERON:2000711DEL
  • ZFS:0000017Gastrula:50%-epiboly
7.40e3
  • 7.40e3
AEIR
  • AEIR
UBERON:2007024anterior neural keel
  • ZFS:0000023Segmentation:1-4 somites
7.40e3
  • 7.40e3
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
8.46e3
  • 8.46e3
  • 8.46e3
  • 8.63e3
  • 8.88e3
  • 8.88e3
  • 8.88e3
  • 9.05e3
  • 9.87e3
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
8.82e3
  • 8.82e3
AEIR
  • AEIR
UBERON:0003068axial mesoderm
  • ZFS:0000021Gastrula:90%-epiboly
9.25e3
  • 9.25e3
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
9.35e3
  • 9.35e3
AEIR
  • AEIR
UBERON:0002346neurectoderm
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000023Segmentation:1-4 somites
9.86e3
  • 9.86e3
  • 1.11e4
AEIR
  • AEIR
  • AEIR
UBERON:2007031anterior neural rod
  • ZFS:0000024Segmentation:5-9 somites
9.86e3
  • 9.86e3
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
AEIR
  • AEIR
ZFA:0000023forerunner cell group (Danio)
  • ZFS:0000019Gastrula:Shield
1.02e4
  • 1.02e4
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
1.13e4
  • 1.13e4
  • 1.38e4
  • 1.40e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0008904neuromast
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
1.15e4
  • 1.15e4
  • 1.23e4
  • 1.36e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004152bulbus arteriosus
  • ZFS:0000035Larval:Protruding-mouth
1.18e4
  • 1.18e4
AEIR
  • AEIR
ZFA:0000003adaxial cell (Danio)
  • ZFS:0000027Segmentation:20-25 somites
1.18e4
  • 1.18e4
AEIR
  • AEIR
UBERON:0003062primitive knot
  • ZFS:0000019Gastrula:Shield
1.21e4
  • 1.21e4
AEIR
  • AEIR
UBERON:2000088YSL
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000016Blastula:30%-epiboly
1.22e4
  • 1.22e4
  • 1.27e4
  • 1.29e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
AEIR
  • AEIR
UBERON:0000089hypoblast (generic)
  • ZFS:0000019Gastrula:Shield
1.23e4
  • 1.23e4
AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000022Gastrula:Bud
1.23e4
  • 1.23e4
AEIR
  • AEIR
UBERON:0002037cerebellum
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
1.23e4
  • 1.23e4
  • 1.30e4
AEIR
  • AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000027Segmentation:20-25 somites
1.23e4
  • 1.23e4
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
1.27e4
  • 1.27e4
  • 1.29e4
  • 1.33e4
  • 1.41e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
1.27e4
  • 1.27e4
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
  • 1.31e4
  • 1.36e4
  • 1.40e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
1.30e4
  • 1.30e4
  • 1.35e4
AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
1.34e4
  • 1.34e4
  • 1.40e4
AEIR
  • AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000029Pharyngula:Prim-5
1.34e4
  • 1.34e4
AEIR
  • AEIR
UBERON:0005498primitive heart tube
  • ZFS:0000029Pharyngula:Prim-5
1.38e4
  • 1.38e4
AEIR
  • AEIR
UBERON:0004141heart tube
  • ZFS:0000031Pharyngula:Prim-25
1.40e4
  • 1.40e4
AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000040Larval:Days 14-20
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0002302myocardium of atrium
  • ZFS:0000035Larval:Protruding-mouth
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0007269pectoral appendage musculature
  • ZFS:0000034Hatching:Pec-fin
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0007284presumptive neural plate
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
1.48e4
  • 1.48e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:2005227protoneuromast
  • ZFS:0000029Pharyngula:Prim-5
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0007135neural keel
  • ZFS:0000025Segmentation:10-13 somites
1.48e4
  • 1.48e4
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation
Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.
Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data: