D. rerio Gene: carm1 - ENSDARG00000018698 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000018698
Namecarm1
Descriptioncoactivator-associated arginine methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040724-77]
OrganismDanio rerio (zebrafish)
Synonym(s)prmt4, si:dkey-204f11.63, zgc:100805
Orthologs(s)22 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
652
  • 652
  • 1.27e3
97.82
  • 97.82
  • 95.76
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
783
  • 783
97.38
  • 97.38
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
973
  • 973
  • 1.07e3
  • 1.17e3
  • 1.87e3
  • 3.95e3
96.74
  • 96.74
  • 96.41
  • 96.07
  • 93.76
  • 86.76
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
996
  • 996
96.67
  • 96.67
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000027Segmentation:20-25 somites
  • UBERON:00072322 cell stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
1.32e3
  • 1.32e3
  • 2.92e3
  • 4.27e3
  • 4.75e3
  • 5.98e3
  • 6.79e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.91e3
  • 7.91e3
  • 7.97e3
  • 8.15e3
  • 8.30e3
  • 8.79e3
95.59
  • 95.59
  • 90.24
  • 85.71
  • 84.08
  • 79.99
  • 77.27
  • 74.99
  • 74.99
  • 74.99
  • 74.99
  • 73.52
  • 73.52
  • 73.32
  • 72.72
  • 72.21
  • 70.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
1.37e3
  • 1.37e3
  • 1.56e3
95.41
  • 95.41
  • 94.77
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.47e3
  • 1.47e3
95.07
  • 95.07
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.51e3
  • 1.51e3
  • 4.22e3
94.94
  • 94.94
  • 85.88
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.66e3
  • 1.66e3
94.45
  • 94.45
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.92e3
  • 2.92e3
  • 5.53e3
90.21
  • 90.21
  • 81.50
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.98e3
  • 2.98e3
90.01
  • 90.01
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.13e3
  • 3.13e3
89.52
  • 89.52
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
3.32e3
  • 3.32e3
88.90
  • 88.90
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.51e3
  • 3.51e3
88.25
  • 88.25
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
3.76e3
  • 3.76e3
  • 6.32e3
87.40
  • 87.40
  • 78.84
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.84e3
  • 3.84e3
87.14
  • 87.14
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.08e3
  • 4.08e3
86.34
  • 86.34
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
4.67e3
  • 4.67e3
84.38
  • 84.38
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
5.38e3
  • 5.38e3
81.97
  • 81.97
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
5.88e3
  • 5.88e3
80.32
  • 80.32
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
6.35e3
  • 6.35e3
78.76
  • 78.76
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
6.72e3
  • 6.72e3
77.49
  • 77.49
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
7.30e3
  • 7.30e3
75.55
  • 75.55
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
7.31e3
  • 7.31e3
75.51
  • 75.51
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
8.10e3
  • 8.10e3
72.87
  • 72.87
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.00e4
  • 1.00e4
66.49
  • 66.49
AEIR
  • AEIR
UBERON:0003062primitive knot
  • ZFS:0000019Gastrula:Shield
1.22e4
  • 1.22e4
59.08
  • 59.08
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
1.31e4
  • 1.31e4
  • 1.31e4
  • 1.37e4
  • 1.39e4
56.22
  • 56.22
  • 56.22
  • 54.13
  • 53.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.33e4
  • 1.33e4
  • 1.36e4
  • 1.37e4
55.53
  • 55.53
  • 54.52
  • 54.13
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001016nervous system
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi16 species16 genesCompare expression
Bilateria22 species22 genesCompare expression

Orthology information comes from OMA : ENSDARG00000018698.

Cross-references

EnsemblENSDARG00000018698 (carm1)
ZFINZDB-GENE-040724-77 (carm1)
EMBLBC078292, BX649502
Uniprot/SPTREMBLI3ISR8, I3ISR8_DANRE, I3ITN7, I3ITN7_DANRE
Uniprot/SWISSPROTCARM1_DANRE, Q6DC04

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