D. rerio Gene: mmp24 - ENSDARG00000018896 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000018896
Namemmp24
Descriptionmatrix metallopeptidase 24 [Source:ZFIN;Acc:ZDB-GENE-040724-262]
OrganismDanio rerio (zebrafish)
Synonym(s)si:ch211-239j9.5, zc239j9.5
Orthologs(s)15 orthologs
Paralog(s)7 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
7.65e3
  • 7.65e3
74.39
  • 74.39
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
7.68e3
  • 7.68e3
74.27
  • 74.27
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
8.76e3
  • 8.76e3
  • 1.21e4
  • 1.99e4
  • 1.99e4
  • 2.12e4
70.66
  • 70.66
  • 59.48
  • 33.29
  • 33.21
  • 28.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
  • 1.41e4
54.12
  • 54.12
  • 52.83
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.53e4
  • 1.53e4
  • 1.85e4
48.87
  • 48.87
  • 38.00
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.00e4
  • 2.00e4
33.03
  • 33.03
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata7 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000018896.

Cross-references

EnsemblENSDARG00000018896 (mmp24)
ZFINZDB-GENE-040724-262 (mmp24)
EMBLAL929108, CR388068
Uniprot/SPTREMBLE9QIX9, E9QIX9_DANRE

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