D. rerio Gene: cstf3 - ENSDARG00000018904 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000018904
Namecstf3
Descriptioncleavage stimulation factor, 3' pre-RNA, subunit 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1997]
OrganismDanio rerio (zebrafish)
Synonym(s)cleavage stimulation factor, 3 pre-rna, subunit 3, wu:fa99c02, wu:fb18b09, zgc:56028

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
568
  • 568
  • 1.60e3
  • 2.24e3
  • 2.55e3
  • 2.57e3
98.08423
  • 98.08423
  • 94.59341
  • 92.44047
  • 91.38540
  • 91.30975
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000106zygote stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
771
  • 771
  • 1.21e3
  • 1.27e3
  • 1.52e3
  • 1.60e3
  • 1.76e3
  • 1.77e3
  • 2.70e3
  • 3.13e3
  • 3.94e3
  • 5.65e3
  • 5.78e3
  • 6.15e3
  • 7.36e3
  • 1.33e4
  • 1.34e4
  • 1.39e4
97.39875
  • 97.39875
  • 95.89855
  • 95.69428
  • 94.85045
  • 94.59971
  • 94.04854
  • 94.02372
  • 90.87680
  • 89.41134
  • 86.68030
  • 80.89902
  • 80.46471
  • 79.20024
  • 75.12112
  • 55.04669
  • 54.82761
  • 53.03314
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
878
  • 878
  • 1.42e4
97.03573
  • 97.03573
  • 52.09940
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
1.02e3
  • 1.02e3
  • 2.06e3
  • 2.85e3
96.54410
  • 96.54410
  • 93.02800
  • 90.38007
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.24e3
  • 1.24e3
95.80488
  • 95.80488
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.24e3
  • 1.24e3
  • 1.66e3
  • 1.72e3
  • 1.78e3
  • 1.96e3
  • 2.27e3
  • 2.50e3
  • 2.61e3
  • 3.46e3
  • 5.60e3
95.80214
  • 95.80214
  • 94.40961
  • 94.20046
  • 94.00293
  • 93.39259
  • 92.34455
  • 91.56534
  • 91.17641
  • 88.29730
  • 81.08563
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.32e3
  • 1.32e3
95.55023
  • 95.55023
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.51e3
  • 1.51e3
94.88618
  • 94.88618
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.68e3
  • 1.68e3
94.34201
  • 94.34201
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.72e3
  • 1.72e3
94.20344
  • 94.20344
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.83e3
  • 1.83e3
  • 1.45e4
93.83405
  • 93.83405
  • 50.87875
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.92e3
  • 1.92e3
  • 3.91e3
93.50680
  • 93.50680
  • 86.80141
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.00e3
  • 2.00e3
93.22868
  • 93.22868
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.04e3
  • 2.04e3
93.10834
  • 93.10834
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.25e3
  • 2.25e3
92.39518
  • 92.39518
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
2.39e3
  • 2.39e3
91.93889
  • 91.93889
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.96e3
  • 2.96e3
90.00220
  • 90.00220
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.99e3
  • 2.99e3
89.91094
  • 89.91094
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.99e3
  • 2.99e3
89.89424
  • 89.89424
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
3.08e3
  • 3.08e3
  • 7.19e3
  • 1.48e4
89.60094
  • 89.60094
  • 75.70018
  • 49.94254
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
3.24e3
  • 3.24e3
89.04230
  • 89.04230
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
3.52e3
  • 3.52e3
88.12076
  • 88.12076
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
3.64e3
  • 3.64e3
87.68868
  • 87.68868
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
3.96e3
  • 3.96e3
  • 5.55e3
  • 6.47e3
86.60207
  • 86.60207
  • 81.23698
  • 78.14240
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
4.04e3
  • 4.04e3
  • 4.32e3
  • 6.97e3
86.33878
  • 86.33878
  • 85.41570
  • 76.44482
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
5.48e3
  • 5.48e3
81.47482
  • 81.47482
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
6.11e3
  • 6.11e3
  • 7.44e3
79.36281
  • 79.36281
  • 74.84442
AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • UBERON:0000106zygote stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000015Blastula:Dome
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000026Segmentation:14-19 somites
6.34e3
  • 6.34e3
  • 6.34e3
  • 6.34e3
  • 6.58e3
  • 6.83e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.89e3
  • 8.46e3
  • 8.46e3
  • 8.63e3
  • 8.71e3
  • 8.71e3
  • 8.88e3
  • 8.88e3
  • 9.05e3
  • 9.05e3
  • 9.05e3
  • 9.62e3
  • 9.87e3
  • 9.87e3
78.56975
  • 78.56975
  • 78.56975
  • 78.56975
  • 77.77439
  • 76.91633
  • 74.99829
  • 74.99829
  • 74.99829
  • 74.99829
  • 74.99829
  • 74.99829
  • 74.99829
  • 74.99829
  • 74.99829
  • 74.99829
  • 74.99829
  • 74.99829
  • 73.32320
  • 71.42518
  • 71.41166
  • 70.82487
  • 70.57472
  • 70.57472
  • 69.98817
  • 69.98310
  • 69.42923
  • 69.42923
  • 69.42923
  • 67.48142
  • 66.65990
  • 66.65314
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
7.16e3
  • 7.16e3
75.78891
  • 75.78891
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
9.34e3
  • 9.34e3
68.43432
  • 68.43432
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.33e4
  • 1.33e4
55.16372
  • 55.16372
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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