D. rerio Gene: acvr1ba - ENSDARG00000018968 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000018968
Nameacvr1ba
Descriptionactivin A receptor, type IBa [Source:ZFIN;Acc:ZDB-GENE-980526-527]
OrganismDanio rerio (zebrafish)
Synonym(s)acvr1b, acvr1b {eco:0000313|embl:aai63346.1,gn eco:0000313|ensembl:ensdarp00000004431}, alk4, axis, taram-a, tarama, wu:fb75f01
Orthologs(s)17 orthologs
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
756
  • 756
  • 1.67e3
  • 6.21e3
  • 6.99e3
97.47
  • 97.47
  • 94.40
  • 79.20
  • 76.59
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
1.09e3
  • 1.09e3
  • 1.61e3
  • 2.39e3
  • 2.51e3
  • 2.68e3
96.35
  • 96.35
  • 94.61
  • 91.99
  • 91.58
  • 91.01
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
1.23e3
  • 1.23e3
  • 1.87e3
  • 3.04e3
  • 3.18e3
  • 3.35e3
  • 3.78e3
95.89
  • 95.89
  • 93.74
  • 89.82
  • 89.34
  • 88.80
  • 87.36
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.30e3
  • 1.30e3
95.65
  • 95.65
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.54e3
  • 1.54e3
94.84
  • 94.84
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.59e3
  • 1.59e3
94.69
  • 94.69
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.61e3
  • 1.61e3
94.61
  • 94.61
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
2.13e3
  • 2.13e3
  • 2.43e3
  • 2.82e3
  • 3.26e3
  • 4.82e3
  • 4.85e3
  • 5.50e3
  • 5.63e3
  • 5.99e3
  • 6.56e3
92.86
  • 92.86
  • 91.86
  • 90.58
  • 89.08
  • 83.85
  • 83.78
  • 81.60
  • 81.16
  • 79.93
  • 78.03
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
2.17e3
  • 2.17e3
92.72
  • 92.72
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000106zygote stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000037Larval:Day 5
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000029Pharyngula:Prim-5
2.24e3
  • 2.24e3
  • 3.11e3
  • 3.25e3
  • 4.20e3
  • 4.57e3
  • 4.60e3
  • 4.90e3
  • 5.59e3
  • 5.82e3
  • 5.88e3
  • 5.95e3
  • 7.49e3
  • 7.56e3
  • 8.59e3
92.49
  • 92.49
  • 89.60
  • 89.12
  • 85.94
  • 84.70
  • 84.60
  • 83.60
  • 81.27
  • 80.52
  • 80.31
  • 80.08
  • 74.93
  • 74.70
  • 71.25
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.45e3
  • 2.45e3
91.79
  • 91.79
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
2.49e3
  • 2.49e3
91.66
  • 91.66
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.59e3
  • 2.59e3
91.32
  • 91.32
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
2.80e3
  • 2.80e3
  • 3.57e3
90.64
  • 90.64
  • 88.05
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
3.02e3
  • 3.02e3
89.89
  • 89.89
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
3.33e3
  • 3.33e3
88.87
  • 88.87
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
3.35e3
  • 3.35e3
  • 3.59e3
88.77
  • 88.77
  • 87.99
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
3.44e3
  • 3.44e3
88.48
  • 88.48
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
3.66e3
  • 3.66e3
87.74
  • 87.74
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
3.80e3
  • 3.80e3
  • 3.99e3
87.27
  • 87.27
  • 86.64
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.97e3
  • 3.97e3
86.72
  • 86.72
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
4.39e3
  • 4.39e3
  • 4.73e3
  • 5.40e3
85.31
  • 85.31
  • 84.16
  • 81.91
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
4.49e3
  • 4.49e3
84.97
  • 84.97
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
4.77e3
  • 4.77e3
  • 4.77e3
84.04
  • 84.04
  • 84.02
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
5.30e3
  • 5.30e3
82.26
  • 82.26
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.38e3
  • 5.38e3
82.00
  • 82.00
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
8.88e3
  • 8.88e3
70.27
  • 70.27
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
8.88e3
  • 8.88e3
70.25
  • 70.25
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
9.74e3
  • 9.74e3
67.39
  • 67.39
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.14
  • 64.14
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
61.36
  • 61.36
AEIR
  • AEIR
ZFA:0000541marginal blastomere (Danio)
  • ZFS:0000015Blastula:Dome
1.33e4
  • 1.33e4
55.55
  • 55.55
AEIR
  • AEIR
UBERON:0004879marginal zone of embryo
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000016Blastula:30%-epiboly
1.34e4
  • 1.34e4
  • 1.49e4
55.24
  • 55.24
  • 49.98
AEIR
  • AEIR
  • AEIR
UBERON:0004749blastodisc
  • UBERON:00072322 cell stage
  • ZFS:0000009Blastula:256-cell
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0008781blastodisc derived epiblast
  • ZFS:0000021Gastrula:90%-epiboly
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2000711DEL
  • ZFS:0000019Gastrula:Shield
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2001378axial hypoblast
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0000089hypoblast (generic)
  • ZFS:0000020Gastrula:75%-epiboly
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0007283presumptive shield
  • ZFS:0000016Blastula:30%-epiboly
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata3 genesCompare expression
Metazoa4 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000018968.

Cross-references

EnsemblENSDARG00000018968 (acvr1ba)
ZFINZDB-GENE-980526-527 (acvr1ba)
EMBLBC163346, BC163377, CR387931
Uniprot/SPTREMBLB3DJ37, B3DJ37_DANRE

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