D. rerio Gene: b3gnt5a - ENSDARG00000018971 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000018971
Nameb3gnt5a
DescriptionUDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5a [Source:ZFIN;Acc:ZDB-GENE-030131-8470]
OrganismDanio rerio (zebrafish)
Synonym(s)b3gnt5, fb12f12, lc3, wu:fb12f12, wu:fe50g08
Orthologs(s)18 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
803
  • 803
  • 1.53e3
  • 2.37e3
  • 3.27e3
  • 4.93e3
  • 5.11e3
  • 5.15e3
  • 5.66e3
  • 6.07e3
  • 6.61e3
  • 7.94e3
  • 9.63e3
  • 1.20e4
  • 1.43e4
  • 1.45e4
  • 1.47e4
97.31
  • 97.31
  • 94.86
  • 92.06
  • 89.05
  • 83.50
  • 82.88
  • 82.75
  • 81.06
  • 79.67
  • 77.88
  • 73.42
  • 67.74
  • 59.78
  • 51.99
  • 51.42
  • 50.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
1.07e3
  • 1.07e3
  • 1.31e3
  • 1.49e3
  • 1.70e3
  • 1.98e3
  • 4.33e3
96.43
  • 96.43
  • 95.60
  • 95.03
  • 94.31
  • 93.37
  • 85.51
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
2.28e3
  • 2.28e3
92.37
  • 92.37
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.49e3
  • 2.49e3
91.66
  • 91.66
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
3.10e3
  • 3.10e3
89.63
  • 89.63
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
3.33e3
  • 3.33e3
  • 4.64e3
88.86
  • 88.86
  • 84.45
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
3.58e3
  • 3.58e3
88.03
  • 88.03
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
3.78e3
  • 3.78e3
  • 5.71e3
87.35
  • 87.35
  • 80.89
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
4.40e3
  • 4.40e3
85.28
  • 85.28
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
4.90e3
  • 4.90e3
  • 5.45e3
  • 5.79e3
83.61
  • 83.61
  • 81.76
  • 80.62
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.03e3
  • 5.03e3
83.15
  • 83.15
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
5.93e3
  • 5.93e3
  • 9.57e3
80.16
  • 80.16
  • 67.94
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
6.07e3
  • 6.07e3
  • 1.00e4
79.69
  • 79.69
  • 66.39
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
6.46e3
  • 6.46e3
78.36
  • 78.36
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
6.56e3
  • 6.56e3
  • 6.86e3
  • 7.41e3
  • 8.55e3
  • 8.71e3
  • 8.75e3
  • 8.87e3
  • 1.28e4
  • 1.38e4
  • 1.39e4
78.02
  • 78.02
  • 77.04
  • 75.20
  • 71.39
  • 70.82
  • 70.69
  • 70.31
  • 57.14
  • 53.79
  • 53.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
6.64e3
  • 6.64e3
77.78
  • 77.78
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000037Larval:Day 5
6.64e3
  • 6.64e3
  • 7.47e3
  • 7.97e3
  • 8.96e3
  • 8.96e3
  • 9.13e3
  • 9.96e3
  • 9.96e3
  • 1.08e4
  • 1.14e4
  • 1.27e4
  • 1.33e4
77.77
  • 77.77
  • 75.00
  • 73.32
  • 69.99
  • 69.99
  • 69.43
  • 66.65
  • 66.65
  • 63.87
  • 61.88
  • 57.47
  • 55.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.81e3
  • 6.81e3
77.21
  • 77.21
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.04e3
  • 7.04e3
76.43
  • 76.43
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
8.38e3
  • 8.38e3
71.94
  • 71.94
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
8.57e3
  • 8.57e3
71.32
  • 71.32
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
9.32e3
  • 9.32e3
68.80
  • 68.80
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
  • 1.87e4
62.46
  • 62.46
  • 37.43
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.13e4
  • 1.13e4
62.29
  • 62.29
AEIR
  • AEIR
UBERON:0005426lens vesicle
  • ZFS:0000029Pharyngula:Prim-5
1.34e4
  • 1.34e4
54.97
  • 54.97
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.96e4
  • 1.96e4
34.40
  • 34.40
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Clupeocephala1 geneCompare expression
Chordata3 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000018971.

Cross-references

EnsemblENSDARG00000018971 (b3gnt5a)
ZFINZDB-GENE-030131-8470 (b3gnt5a)
EMBLAY292460, BC075943
Uniprot/SWISSPROTB3G5A_DANRE, Q7T3S5

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